1VQN

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
Ed1vqna1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Haloarcula marismortui ) [TaxId: 2238 ]
Ed1vqna2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Haloarcula marismortui ) [TaxId: 2238 ]
Fd1vqnb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Haloarcula marismortui ) [TaxId: 2238 ]
Gd1vqnc1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Haloarcula marismortui ) [TaxId: 2238 ]
Hd1vqnd1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Haloarcula marismortui ) [TaxId: 2238 ]
Id1vqne1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Haloarcula marismortui ) [TaxId: 2238 ]
Id1vqne2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Haloarcula marismortui ) [TaxId: 2238 ]
Jd1vqnf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae (Haloarcula marismortui ) [TaxId: 2238 ]
Kd1vqng1 Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 (Haloarcula marismortui ) [TaxId: 2238 ]
Ld1vqnh1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e (Haloarcula marismortui ) [TaxId: 2238 ]
Md1vqnj1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Haloarcula marismortui ) [TaxId: 2238 ]
Nd1vqnk1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Haloarcula marismortui ) [TaxId: 2238 ]
Od1vqnl1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Haloarcula marismortui ) [TaxId: 2238 ]
Pd1vqnm1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e (Haloarcula marismortui ) [TaxId: 2238 ]
Qd1vqnn1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Haloarcula marismortui ) [TaxId: 2238 ]
Rd1vqno1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e (Haloarcula marismortui ) [TaxId: 2238 ]
Sd1vqnp1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) (Haloarcula marismortui ) [TaxId: 2238 ]
Td1vqnq1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e (Haloarcula marismortui ) [TaxId: 2238 ]
Ud1vqnr1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Haloarcula marismortui ) [TaxId: 2238 ]
Vd1vqns1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Haloarcula marismortui ) [TaxId: 2238 ]
Wd1vqnt1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Haloarcula marismortui ) [TaxId: 2238 ]
Xd1vqnu1 Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e (Haloarcula marismortui ) [TaxId: 2238 ]
Yd1vqnv1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Haloarcula marismortui ) [TaxId: 2238 ]
Zd1vqnw1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) (Haloarcula marismortui ) [TaxId: 2238 ]
AAd1vqnx1 Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e (Haloarcula marismortui ) [TaxId: 2238 ]
BAd1vqny1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e (Haloarcula marismortui ) [TaxId: 2238 ]
CAd1vqnz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae (Haloarcula marismortui ) [TaxId: 2238 ]
DAd1vqn11 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e (Haloarcula marismortui ) [TaxId: 2238 ]
EAd1vqn21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e (Haloarcula marismortui ) [TaxId: 2238 ]
FAd1vqn31 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e (Haloarcula marismortui ) [TaxId: 2238 ]
GAd1vqni1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Haloarcula marismortui ) [TaxId: 2238 ]
ChainDomainClassArchitectureTopologyHomology
E2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
E2.30.30.30 Mainly Beta Roll SH3 type barrels.
E4.10.950.10 Few Secondary Structures Irregular Ribosomal protein L2 domain 3
F4.10.960.10 Few Secondary Structures Irregular Ribosomal protein L3 domain 3
F4.10.960.10 Few Secondary Structures Irregular Ribosomal protein L3 domain 3
F2.40.30.10 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3
F2.40.30.10 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3
F2.40.30.10 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3
F3.30.1430.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3 Chain: B
G3.40.1370.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4 Chain: A
H3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5 Chain: A,
I3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3
I3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3
J3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
L3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase domain 3
M3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p Chain: A
N2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14/L23
O4.10.990.10 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15 Chain: K
O3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2
P3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein L15
Q3.30.420.100 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5
R3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2
S1.10.1650.10 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
S1.20.5.560 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Heli x bin
S1.10.1200.60 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain A
T2.30.30.70 Mainly Beta Roll SH3 type barrels. Ribosomal protein L21
U3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22 Chain A
V3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domain
W2.30.30.30 Mainly Beta Roll SH3 type barrels.
X2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e Chain: T
Y1.10.287.310 Mainly Alpha Orthogonal Bundle Helix Hairpins
Z3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30 Chain: A,
Z3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30 Chain: A,
Z1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3
AA3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e Chain: W
CA2.20.25.30 Mainly Beta Single Sheet N-terminal domain of TfIIb
DA2.20.25.30 Mainly Beta Single Sheet N-terminal domain of TfIIb
EA1.10.1620.10 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain Chain: I
FA3.10.450.80 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,
GA1.10.10.250 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ribosomal protein L11/L12, C-terminal domain

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
EPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
EPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
FPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
GPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
HPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
HPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
IPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
JPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
KPF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
KPF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
LPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
MPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
NPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
OPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
QPF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
RPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
SPF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
TPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
UPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
VPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
WPF00467KOW motif (KOW)KOW motif- Family
XPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
YPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
ZPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
AAPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
BAPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
CAPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
DAPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
EAPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
FAPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
GAPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
GAPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
023S ribosomal rnanone none none
95S ribosomal RNAnone none none
45'-R(*CP*CP*(PPU)*(LOF))-3'none none none
55'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3'none none none
A50S ribosomal protein L2P
B50S ribosomal protein L3P
C50S ribosomal protein L4E
D50S ribosomal protein L5P
E50S ribosomal protein L6P
F50S ribosomal protein L7AE
GACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
H50S RIBOSOMAL PROTEIN L10E
J50S ribosomal protein L13P
K50S ribosomal protein L14P
L50S ribosomal protein L15P
M50S Ribosomal Protein L15E
N50S ribosomal protein L18P
O50S ribosomal protein L18e
P50S ribosomal protein L19E
Q50S ribosomal protein L21e
R50S ribosomal protein L22P
S50S ribosomal protein L23P
T50S ribosomal protein L24P
U50S ribosomal protein L24E
V50S ribosomal protein L29P
W50S ribosomal protein L30P
X50S ribosomal protein L31e
Y50S ribosomal protein L32E
Z50S ribosomal protein L37Ae
150S ribosomal protein L37e
250S ribosomal protein L39e
350S ribosomal protein L44E
I50S RIBOSOMAL PROTEIN L11P