Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr12 : 7,067,236


PTPN6 - 12p13.31

protein tyrosine phosphatase, non-receptor type 6

Locus: 12p13.31Orientation: +
View position on Gene View: PTPN6
Position in mRNA: 1367 (phase: 1)
UniProt mapping via isoform 2 (position on isoform:456)
View position 454 on canonical UniProt sequence: P29350 Residue: S
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 2B3O A 454 2
Mapping to Pathway Maps for P29350
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547