Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr17 : 43,106,478


BRCA1 - 17q21.31

BRCA1, DNA repair associated

Locus: 17q21.31 Orientation: -
View position on Gene View: BRCA1
Position in mRNA: 190 (phase: 0)
UniProt mapping via isoform 3 (position on isoform:64)
View position 64 on canonical UniProt sequence: P38398 Residue: C
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 1JM7 A 64 3
Mapping to Pathway Maps for P38398
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547