Atomic-level structure of the entire HIV-1 capsid

Sequence Display for the Entities in PDB 3J3Q

The graphical representation below shows this entry's sequences as reported in UniProtKB, in the sample (SEQRES), or as observed in the experiment (ATOM). Different 3rd party annotations can be graphically mapped on the sequence and displayed in the Jmol viewer. Read more about the sequence display on our help pages.

The structure 3J3Q has in total 1356 chains. These are represented by 1 sequence-unique entity.

Previous 0,1,10 11,12,13 14,15,16 17,18,19 1A,1B,1C 1D,1E,1F 1G,1H,1I 1J,1K,1L 1M,1N,1O 1P,1Q,1R 1S,1T,1U 1V,1W,1X 1Y,1Z,1a 1b,1c,1d 1e,1f,1g 1h,1i,1j 1k,1l,1m 1n,1o,1p 1q,1r,1s 1t,1u,1v 1w,1x,1y 1z,2,20 21,22,23 24,25,26 27,28,29 2A,2B,2C 2D,2E,2F 2G,2H,2I 2J,2K,2L 2M,2N,2O 2P,2Q,2R 2S,2T,2U 2V,2W,2X 2Y,2Z,2a 2b,2c,2d 2e,2f,2g 2h,2i,2j 2k,2l,2m 2n,2o,2p 2q,2r,2s 2t,2u,2v 2w,2x,2y 2z,3,30 31,32,33 34,35,36 37,38,39 3A,3B,3C 3D,3E,3F 3G,3H,3I 3J,3K,3L 3M,3N,3O 3P,3Q,3R 3S,3T,3U 3V,3W,3X 3Y,3Z,3a 3b,3c,3d 3e,3f,3g 3h,3i,3j 3k,3l,3m 3n,3o,3p 3q,3r,3s 3t,3u,3v 3w,3x,3y 3z,4,40 41,42,43 44,45,46 47,48,49 4A,4B,4C 4D,4E,4F 4G,4H,4I 4J,4K,4L 4M,4N,4O 4P,4Q,4R 4S,4T,4U 4V,4W,4X 4Y,4Z,4a 4b,4c,4d 4e,4f,4g 4h,4i,4j 4k,4l,4m 4n,4o,4p 4q,4r,4s 4t,4u,4v

Currently viewing: Chain 4w,4x,4y

4z,5,50 51,52,53 54,55,56 57,58,59 5A,5B,5C 5D,5E,5F 5G,5H,5I 5J,5K,5L 5M,5N,5O 5P,5Q,5R 5S,5T,5U 5V,5W,5X 5Y,5Z,5a 5b,5c,5d 5e,5f,5g 5h,5i,5j 5k,5l,5m 5n,5o,5p 5q,5r,5s 5t,5u,5v 5w,5x,5y 5z,6,60 61,62,63 64,65,66 67,68,69 6A,6B,6C 6D,6E,6F 6G,6H,6I 6J,6K,6L 6M,6N,6O 6P,6Q,6R 6S,6T,6U 6V,6W,6X 6Y,6Z,6a 6b,6c,6d 6e,6f,6g 6h,6i,6j 6k,6l,6m 6n,6o,6p 6q,6r,6s 6t,6u,6v 6w,6x,6y 6z,7,70 71,72,73 74,75,76 77,78,79 7A,7B,7C 7D,7E,7F 7G,7H,7I 7J,7K,7L 7M,7N,7O 7P,7Q,7R 7S,7T,7U 7V,7W,7X 7Y,7Z,7a 7b,7c,7d 7e,7f,7g 7h,7i,7j 7k,7l,7m 7n,7o,7p 7q,7r,7s 7t,7u,7v 7w,7x,7y 7z,8,80 81,82,83 84,85,86 87,88,89 8A,8B,8C 8D,8E,8F 8G,8H,8I 8J,8K,8L 8M,8N,8O 8P,8Q,8R 8S,8T,8U 8V,8W,8X 8Y,8Z,8a 8b,8c,8d 8e,8f,8g 8h,8i,8j 8k,8l,8m 8n,8o,8p 8q,8r,8s 8t,8u,8v 8w,8x,8y 8z,9,90 91,92,93 94,95,96 97,98,99 9A,9B,9C 9D,9E,9F 9G,9H,9I 9J,9K,9L 9M,9N,9O 9P,9Q,9R 9S,9T,9U 9V,9W,9X 9Y,9Z,9a 9b,9c,9d 9e,9f,9g 9h,9i,9j 9k,9l,9m 9n,9o,9p 9q,9r,9s 9t,9u,9v 9w,9x,9y 9z,A,B C,D,E F,G,H I,J,K L,M,N O,P,Q R,S,T U,V,W X,Y,Z a,a0,a1 a2,a3,a4 a5,a6,a7 a8,a9,aA aB,aC,aD aE,aF,aG aH,aI,aJ aK,aL,aM aN,aO,aP aQ,aR,aS aT,aU,aV aW,aX,aY aZ,aa,ab ac,ad,ae af,ag,ah ai,aj,ak al,am,an ao,ap,aq ar,as,at au,av,aw ax,ay,az b,b0,b1 b2,b3,b4 b5,b6,b7 b8,b9,bA bB,bC,bD bE,bF,bG bH,bI,bJ bK,bL,bM bN,bO,bP bQ,bR,bS bT,bU,bV bW,bX,bY bZ,ba,bb bc,bd,be bf,bg,bh bi,bj,bk bl,bm,bn bo,bp,bq br,bs,bt bu,bv,bw bx,by,bz c,c0,c1 c2,c3,c4 c5,c6,c7 c8,c9,cA cB,cC,cD cE,cF,cG cH,cI,cJ cK,cL,cM cN,cO,cP cQ,cR,cS cT,cU,cV cW,cX,cY cZ,ca,cb cc,cd,ce cf,cg,ch ci,cj,ck cl,cm,cn co,cp,cq cr,cs,ct cu,cv,cw cx,cy,cz d,d0,d1 d2,d3,d4 d5,d6,d7 d8,d9,dA dB,dC,dD dE,dF,dG dH,dI,dJ dK,dL,dM dN,dO,dP dQ,dR,dS dT,dU,dV dW,dX,dY dZ,da,db dc,dd,de df,dg,dh di,dj,dk dl,dm,dn do,dp,dq dr,ds,dt du,dv,dw dx,dy,dz e,e0,e1 e2,e3,e4 e5,e6,e7 e8,e9,eA eB,eC,eD eE,eF,eG eH,eI,eJ eK,eL,eM eN,eO,eP eQ,eR,eS eT,eU,eV eW,eX,eY eZ,ea,eb ec,ed,ee ef,eg,eh ei,ej,ek el,em,en eo,ep,eq er,es,et eu,ev,ew ex,ey,ez f,f0,f1 f2,f3,f4 f5,f6,f7 f8,f9,fA fB,fC,fD fE,fF,fG fH,fI,fJ fK,fL,fM fN,fO,fP fQ,fR,fS fT,fU,fV fW,fX,fY fZ,fa,fb fc,fd,fe ff,fg,fh fi,fj,fk fl,fm,fn fo,fp,fq fr,fs,ft fu,fv,fw fx,fy,fz g,g0,g1 g2,g3,g4 g5,g6,g7 g8,g9,gA gB,gC,gD gE,gF,gG gH,gI,gJ gK,gL,gM gN,gO,gP gQ,gR,gS gT,gU,gV gW,gX,gY gZ,ga,gb gc,gd,ge gf,gg,gh gi,gj,gk gl,gm,gn go,gp,gq gr,gs,gt gu,gv,gw gx,gy,gz h,h0,h1 h2,h3,h4 h5,h6,h7 h8,h9,hA hB,hC,hD hE,hF,hG hH,hI,hJ hK,hL,hM hN,hO,hP hQ,hR,hS hT,hU,hV hW,hX,hY hZ,ha,hb hc,hd,he hf,hg,hh hi,hj,hk hl,hm,hn ho,hp,hq hr,hs,ht hu,hv,hw hx,hy,hz i,i0,i1 i2,i3,i4 i5,i6,i7 i8,i9,iA iB,iC,iD iE,iF,iG iH,iI,iJ iK,iL,iM iN,iO,iP iQ,iR,iS iT,iU,iV iW,iX,iY iZ,ia,ib ic,id,ie if,ig,ih ii,ij,ik il,im,in io,ip,iq ir,is,it iu,iv,iw ix,iy,iz j,j0,j1 j2,j3,j4 j5,j6,j7 j8,j9,jA jB,jC,jD jE,jF,jG jH,jI,jJ jK,jL,jM jN,jO,jP jQ,jR,jS jT,jU,jV jW,jX,jY jZ,ja,jb jc,jd,je jf,jg,jh ji,jj,jk jl,jm,jn jo,jp,jq jr,js,jt ju,jv,jw jx,jy,jz k,k0,k1 k2,k3,k4 k5,k6,k7 k8,k9,kA kB,kC,kD kE,kF,kG kH,kI,kJ kK,kL,kM kN,kO,kP kQ,kR,kS kT,kU,kV kW,kX,kY kZ,ka,kb kc,kd,ke kf,kg,kh ki,kj,kk kl,km,kn ko,kp,kq kr,ks,kt ku,kv,kw kx,ky,kz l,l0,l1 l2,l3,l4 l5,l6,l7 l8,l9,lA lB,lC,lD lE,lF,lG lH,lI,lJ lK,lL,lM lN,lO,lP lQ,lR,la lb,lc,ld le,lf,lg lh,li,lj lk,ll,lm ln,lo,lp lq,lr,ls lt,lu,lv lw,lx,ly lz,m,n o,p,q r,s,t u,v,w x,y,z Next

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Symbols used in Protein Modification track:

The PDB to UniProt mapping is based on the data provided by the EBI SIFTS project. See also Velankar et al., Nucleic Acids Research 33, D262-265 (2005).

Protein Modification information provided by BioJava-ModFinder: Identification of protein modifications in 3D structures from the Protein Data Bank

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