Sequence Similarity Clusters for the Entities in PDB 1VQN

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 996
95 % 11 47 1374 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 12 68 898
70 % 12 68 937
50 % 25 111 402
40 % 25 111 424
30 % 25 111 443
Entity #11 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 1063
95 % 11 64 923 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 11 64 949
70 % 11 64 984
50 % 11 64 1043
40 % 11 64 1083
30 % 11 64 1122
Entity #12 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 987
95 % 11 47 1361 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 11 47 1393
70 % 11 47 1433
50 % 12 68 973
40 % 12 72 944
30 % 12 72 982
Entity #13 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 546
95 % 12 74 746 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 74 789
70 % 12 74 831
50 % 12 74 858
40 % 12 74 906
30 % 12 75 927
Entity #14 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 2402
95 % 12 68 841 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 12 68 896
70 % 12 68 928
50 % 12 70 930
40 % 12 70 978
30 % 12 70 993
Entity #15 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 558
95 % 12 74 766 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 12 74 805
70 % 12 74 835
50 % 12 74 871
40 % 12 74 921
30 % 12 74 956
Entity #16 | Chains: M
50S Ribosomal Protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 2255
95 % 11 47 1364 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 11 47 1394
70 % 12 67 942
50 % 12 70 925
40 % 12 70 967
30 % 12 70 1002
Entity #17 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 550
95 % 12 74 754 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 12 74 795
70 % 12 74 823
50 % 12 76 836
40 % 12 76 881
30 % 12 76 916
Entity #18 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 622
95 % 12 68 846 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 12 68 884
70 % 12 68 923
50 % 12 70 924
40 % 12 70 969
30 % 12 70 1000
Entity #19 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 988
95 % 12 68 843 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 12 68 879
70 % 12 68 921
50 % 12 68 963
40 % 12 70 962
30 % 12 74 954
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 611
95 % 12 68 837 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 874
70 % 12 68 910
50 % 12 68 953
40 % 12 68 1000
30 % 12 68 1036
Entity #21 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 67 636
95 % 12 68 848 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 12 68 887
70 % 12 68 939
50 % 12 68 974
40 % 12 68 1019
30 % 12 70 990
Entity #22 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 562
95 % 12 74 767 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 12 74 806
70 % 12 74 839
50 % 12 77 829
40 % 12 79 841
30 % 12 79 872
Entity #23 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 563
95 % 12 74 765 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 74 804
70 % 12 74 833
50 % 12 74 869
40 % 12 74 918
30 % 12 78 889
Entity #24 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 70 597
95 % 12 70 821 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 12 70 850
70 % 12 70 888
50 % 12 70 918
40 % 12 70 960
30 % 12 70 995
Entity #25 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 551
95 % 12 74 755 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 12 74 796
70 % 12 74 824
50 % 12 74 862
40 % 12 74 912
30 % 12 74 946
Entity #26 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 612
95 % 12 68 851 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 892
70 % 12 68 930
50 % 12 68 970
40 % 12 70 973
30 % 12 70 1006
Entity #27 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 64 676
95 % 12 64 906 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 12 64 948
70 % 12 64 985
50 % 12 64 1029
40 % 12 64 1072
30 % 12 64 1110
Entity #28 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 63 687
95 % 12 63 940 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 63 979
70 % 12 63 1016
50 % 12 63 1060
40 % 12 63 1099
30 % 12 63 1137
Entity #29 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 20 3163
95 % 9 23 3166 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 23 3273
70 % 9 23 3248
50 % 9 23 3194
40 % 9 23 3196
30 % 9 187 253
Entity #3 | Chains: 4
5'-R(*CP*CP*(PPU)*(LOF))-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 619
95 % 12 68 842 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 881
70 % 12 68 919
50 % 12 69 931
40 % 12 69 979
30 % 12 69 1014
Entity #31 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 989
95 % 12 68 853 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 68 894
70 % 12 68 932
50 % 12 68 968
40 % 12 68 1012
30 % 12 68 1049
Entity #32 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 613
95 % 12 68 850 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 12 68 891
70 % 12 68 917
50 % 12 68 957
40 % 12 70 958
30 % 12 70 1005
Entity #33 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 42 1150
95 % 11 42 1546 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 11 42 1577
70 % 11 42 1607
50 % 12 46 1430
40 % 12 46 1473
30 % 12 46 1510
Entity #4 | Chains: 5
5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 991
95 % 12 68 849 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 68 889
70 % 12 68 929
50 % 12 70 920
40 % 12 237 197
30 % 12 237 205
Entity #6 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 67 634
95 % 12 74 761 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 12 74 802
70 % 12 74 837
50 % 12 74 873
40 % 12 76 888
30 % 12 74 958
Entity #7 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 1064
95 % 12 74 751 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 12 74 793
70 % 12 74 820
50 % 12 74 861
40 % 12 76 877
30 % 13 78 890
Entity #8 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 553
95 % 12 74 759 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 12 74 799
70 % 12 74 816
50 % 12 74 865
40 % 12 76 883
30 % 12 76 917
Entity #9 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 624
95 % 12 68 857 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 878
70 % 12 68 913
50 % 12 68 954
40 % 12 70 957
30 % 12 245 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures