1VQN

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui


Sequence Similarity Clusters for the Entities in PDB 1VQN

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 47 1105
95 % 11 47 1475
90 % 12 68 988
70 % 12 68 1022
50 % 25 116 418
40 % 25 116 445
30 % 25 116 462
Entity #11 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 44 1207
95 % 11 64 1038
90 % 11 64 1077
70 % 11 64 1113
50 % 11 64 1154
40 % 11 64 1186
30 % 11 64 1230
Entity #12 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 47 1099
95 % 11 47 1481
90 % 11 47 1513
70 % 11 47 1547
50 % 12 68 1083
40 % 12 72 1031
30 % 12 72 1079
Entity #13 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 635
95 % 12 74 859
90 % 12 74 880
70 % 12 74 923
50 % 12 74 967
40 % 12 74 987
30 % 12 75 1019
Entity #14 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 24 2687
95 % 12 68 973
90 % 12 68 1011
70 % 12 68 1051
50 % 12 70 1043
40 % 12 70 1077
30 % 12 70 1123
Entity #15 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 634
95 % 12 74 854
90 % 12 74 886
70 % 12 74 917
50 % 12 74 965
40 % 12 74 997
30 % 12 74 1042
Entity #16 | Chains: M
50S Ribosomal Protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 24 2458
95 % 11 47 1477
90 % 11 47 1510
70 % 12 67 1057
50 % 12 70 1024
40 % 12 70 1055
30 % 12 70 1098
Entity #17 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 638
95 % 12 74 862
90 % 12 74 897
70 % 12 74 929
50 % 12 76 932
40 % 12 76 955
30 % 12 76 1004
Entity #18 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 703
95 % 12 68 961
90 % 12 68 998
70 % 12 68 1030
50 % 12 70 1027
40 % 12 70 1057
30 % 12 70 1103
Entity #19 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 47 1111
95 % 12 68 956
90 % 12 68 997
70 % 12 68 1047
50 % 12 68 1070
40 % 12 70 1063
30 % 12 75 1028
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 702
95 % 12 68 963
90 % 12 68 995
70 % 12 68 1027
50 % 12 68 1074
40 % 12 68 1109
30 % 12 68 1158
Entity #21 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 67 720
95 % 12 68 969
90 % 12 68 1004
70 % 12 68 1039
50 % 12 68 1067
40 % 12 68 1114
30 % 12 70 1097
Entity #22 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 630
95 % 12 74 850
90 % 12 74 883
70 % 12 74 912
50 % 12 77 922
40 % 12 79 919
30 % 12 79 963
Entity #23 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 639
95 % 12 74 851
90 % 12 74 885
70 % 12 74 916
50 % 12 74 959
40 % 12 74 991
30 % 12 78 986
Entity #24 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 70 693
95 % 12 70 941
90 % 12 70 973
70 % 12 70 1005
50 % 12 70 1042
40 % 12 70 1076
30 % 12 70 1122
Entity #25 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 632
95 % 12 74 853
90 % 12 74 887
70 % 12 74 918
50 % 12 74 962
40 % 12 74 994
30 % 12 74 1043
Entity #26 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 705
95 % 12 68 967
90 % 12 68 1003
70 % 12 68 1044
50 % 12 68 1082
40 % 12 70 1067
30 % 12 70 1113
Entity #27 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 64 770
95 % 12 64 1049
90 % 12 64 1088
70 % 12 64 1115
50 % 12 64 1162
40 % 12 64 1199
30 % 12 64 1235
Entity #28 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 63 784
95 % 12 63 1062
90 % 12 63 1100
70 % 12 63 1133
50 % 12 63 1179
40 % 12 63 1220
30 % 12 63 1256
Entity #29 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 3398
95 % 9 23 3549
90 % 9 23 3613
70 % 9 23 3612
50 % 9 23 3573
40 % 9 23 3545
30 % 9 207 252
Entity #3 | Chains: 4
5'-R(*CP*CP*(PPU)*(LOF))-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 717
95 % 12 68 968
90 % 12 68 1005
70 % 12 68 1045
50 % 12 69 1047
40 % 12 69 1081
30 % 12 69 1126
Entity #31 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 47 1110
95 % 12 68 966
90 % 12 68 1001
70 % 12 68 1041
50 % 12 68 1072
40 % 12 68 1111
30 % 12 68 1157
Entity #32 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 709
95 % 12 68 972
90 % 12 68 1010
70 % 12 68 1050
50 % 12 68 1086
40 % 12 70 1074
30 % 12 70 1119
Entity #33 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 42 1256
95 % 11 42 1653
90 % 11 42 1723
70 % 11 42 1757
50 % 12 46 1563
40 % 12 46 1596
30 % 12 46 1636
Entity #4 | Chains: 5
5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 47 1098
95 % 12 68 958
90 % 12 68 992
70 % 12 68 1048
50 % 12 70 1040
40 % 12 257 196
30 % 12 257 209
Entity #6 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 67 721
95 % 12 74 857
90 % 12 74 893
70 % 12 74 914
50 % 12 74 960
40 % 12 76 959
30 % 12 74 1038
Entity #7 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 44 1198
95 % 12 74 856
90 % 12 74 892
70 % 12 74 922
50 % 12 74 964
40 % 12 76 962
30 % 13 78 977
Entity #8 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 74 636
95 % 12 74 861
90 % 12 74 896
70 % 12 74 926
50 % 12 74 956
40 % 12 76 958
30 % 12 76 1014
Entity #9 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 68 701
95 % 12 68 957
90 % 12 68 990
70 % 12 68 1024
50 % 12 68 1068
40 % 12 264 189
30 % 12 265 200

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures