Sequence Similarity Clusters for the Entities in PDB 1VQN

Entity #1 | Chains: 0
23S ribosomal rna rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: F
50S ribosomal protein L7AE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 971
95 % 11 47 1334 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 12 68 854
70 % 12 68 902
50 % 24 108 409
40 % 24 108 428
30 % 24 108 442
Entity #11 | Chains: G
ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 1036
95 % 11 64 868 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 11 64 905
70 % 11 64 957
50 % 11 64 1015
40 % 11 64 1057
30 % 11 64 1092
Entity #12 | Chains: H
50S RIBOSOMAL PROTEIN L10E protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 970
95 % 11 47 1333 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 11 47 1365
70 % 11 47 1404
50 % 12 68 949
40 % 12 72 920
30 % 12 72 960
Entity #13 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 534
95 % 12 74 720 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 74 753
70 % 12 74 799
50 % 12 74 849
40 % 12 74 902
30 % 12 75 912
Entity #14 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 2330
95 % 12 68 808 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 12 68 843
70 % 12 68 889
50 % 12 70 900
40 % 12 70 965
30 % 12 70 993
Entity #15 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 527
95 % 12 74 714 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 12 74 749
70 % 12 74 791
50 % 12 74 847
40 % 12 74 901
30 % 12 74 928
Entity #16 | Chains: M
50S Ribosomal Protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 24 2180
95 % 11 47 1325 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 11 47 1369
70 % 12 67 914
50 % 12 70 912
40 % 12 223 204
30 % 12 223 214
Entity #17 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 536
95 % 12 74 727 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 12 74 764
70 % 12 74 807
50 % 12 76 829
40 % 12 76 877
30 % 12 76 907
Entity #18 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 589
95 % 12 68 800 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 12 68 836
70 % 12 68 883
50 % 12 70 899
40 % 12 70 945
30 % 12 70 972
Entity #19 | Chains: P
50S ribosomal protein L19E protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 969
95 % 12 68 815 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 12 68 853
70 % 12 68 897
50 % 12 68 953
40 % 12 70 964
30 % 12 72 961
Entity #2 | Chains: 9
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 585
95 % 12 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 851
70 % 12 68 876
50 % 12 68 952
40 % 12 68 1003
30 % 12 68 1017
Entity #21 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 67 604
95 % 12 68 812 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 12 68 848
70 % 12 68 903
50 % 12 68 957
40 % 12 68 1005
30 % 12 70 985
Entity #22 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 535
95 % 12 74 726 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 12 74 763
70 % 12 74 806
50 % 12 77 817
40 % 12 79 825
30 % 12 79 863
Entity #23 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 532
95 % 12 74 718 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 74 751
70 % 12 74 795
50 % 12 74 852
40 % 12 74 905
30 % 12 78 880
Entity #24 | Chains: U
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 70 569
95 % 12 70 768 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 12 70 803
70 % 12 70 850
50 % 12 70 908
40 % 12 70 951
30 % 12 70 977
Entity #25 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 525
95 % 12 74 716 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 12 74 750
70 % 12 74 793
50 % 12 74 850
40 % 12 74 903
30 % 12 74 930
Entity #26 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 596
95 % 12 68 811 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 846
70 % 12 68 892
50 % 12 68 950
40 % 12 70 960
30 % 12 70 986
Entity #27 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 64 633
95 % 12 64 865 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 12 64 904
70 % 12 64 955
50 % 12 64 1011
40 % 12 64 1052
30 % 12 64 1085
Entity #28 | Chains: Y
50S ribosomal protein L32E protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 63 653
95 % 12 63 901 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 63 925
70 % 12 63 974
50 % 12 63 1038
40 % 12 63 1068
30 % 12 63 1107
Entity #29 | Chains: Z
50S ribosomal protein L37Ae protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 20 3034
95 % 9 23 3110 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 9 23 3176
70 % 9 23 3164
50 % 9 23 3151
40 % 9 23 3135
30 % 9 164 276
Entity #3 | Chains: 4
5'-R(*CP*CP*(PPU)*(LOF))-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 591
95 % 12 68 792 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 828
70 % 12 68 874
50 % 12 69 917
40 % 12 69 967
30 % 12 69 996
Entity #31 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 958
95 % 12 68 807 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 68 842
70 % 12 68 888
50 % 12 68 940
40 % 12 68 994
30 % 12 68 1023
Entity #32 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 588
95 % 12 68 799 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 12 68 834
70 % 12 68 882
50 % 12 68 939
40 % 12 70 944
30 % 12 70 971
Entity #33 | Chains: I
50S RIBOSOMAL PROTEIN L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 42 1091
95 % 11 42 1468 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 11 42 1502
70 % 11 42 1544
50 % 12 46 1398
40 % 12 46 1446
30 % 12 46 1472
Entity #4 | Chains: 5
5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 47 962
95 % 12 68 804 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 68 840
70 % 12 68 875
50 % 12 70 909
40 % 12 214 210
30 % 12 214 221
Entity #6 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 67 603
95 % 12 74 722 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 12 74 756
70 % 12 74 792
50 % 12 74 848
40 % 12 76 875
30 % 12 74 929
Entity #7 | Chains: C
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 44 1027
95 % 12 74 725 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 12 74 760
70 % 12 74 803
50 % 12 74 856
40 % 12 76 874
30 % 13 78 871
Entity #8 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 526
95 % 12 74 719 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 12 74 752
70 % 12 74 798
50 % 12 74 854
40 % 12 76 867
30 % 12 76 898
Entity #9 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 68 590
95 % 12 68 801 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 68 837
70 % 12 68 905
50 % 12 68 941
40 % 12 70 950
30 % 12 222 212

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures