Sequence Similarity Clusters for the Entities in PDB 4HHB

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 258 12
95 % 25 269 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 25 269 19
70 % 32 337 18
50 % 76 765 4
40 % 76 770 7
30 % 243 1323 6
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 218 43
95 % 22 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 22 259 20
70 % 31 352 15
50 % 77 765 4
40 % 77 770 7
30 % 244 1323 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures