Sequence Similarity Clusters for the Entities in PDB 5DK3

Entity #1 | Chains: A,F
Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14721
95 % 2 3 15295 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 75 244 75
70 % 815 2416 2
50 % 1034 3067 2
40 % 1034 3067 2
30 % 2113 6228 1
Entity #2 | Chains: B,G
Heavy Chain protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45973
95 % 1 1 41850 Flexibility: High
Max RMSD: 19.0, Avg RMSD: 19.0
PDBFlex
90 % 1 1 39912
70 % 3 8 6811
50 % 4 17 2359
40 % 4 23 1465
30 % 4 23 1498

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures