Sequence Similarity Clusters for the Entities in PDB 5DK3

Entity #1 | Chains: A,F
Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17353
95 % 2 3 16299 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 73 235 78
70 % 799 2368 2
50 % 1014 3003 2
40 % 1014 3003 2
30 % 2070 6095 1
Entity #2 | Chains: B,G
Heavy Chain protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55097
95 % 1 1 41460 Flexibility: High
Max RMSD: 19.0, Avg RMSD: 19.0
PDBFlex
90 % 1 1 39111
70 % 3 8 6897
50 % 3 15 2927
40 % 3 21 1644
30 % 3 21 1671

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures