Sequence Similarity Clusters for the Entities in PDB 5MBW

Entity #1 | Chains: A
Beta-secretase 1 protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 187 214 81
95 % 348 387 25 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 348 387 27
70 % 327 363 49
50 % 327 363 83
40 % 327 363 99
30 % 327 363 99
Entity #2 | Chains: B
BACE1 INHIBITOR PEPTIDE Pep#3 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures