Sequence Similarity Clusters for the Entities in PDB 5MCQ

Entity #1 | Chains: A
Beta-secretase 1 protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 214 78
95 % 87 381 30 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 87 381 32
70 % 82 357 48
50 % 82 357 84
40 % 82 357 102
30 % 82 357 98
Entity #2 | Chains: D
BACE-1 ACTIVE AND EXOSITE BINDING INHIBITOR protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80827
95 % 1 1 52670
90 % 1 1 49806
70 % 1 1 43593
50 % 1 1 37671
40 % 1 1 34095
30 % 1 1 30058

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures