Sequence Similarity Clusters for the Entities in PDB 6H6H

Entity #1 | Chains: A,D
H-2D cell surface glycoprotein protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48116
95 % 7 8 3174 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 8 3333
70 % 10 13 2428
50 % 12 17 2049
40 % 12 17 2091
30 % 12 17 2128
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 144 114
95 % 136 273 70 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 136 273 77
70 % 684 1114 4
50 % 698 1138 3
40 % 698 1138 4
30 % 698 1138 10
Entity #3 | Chains: C,F
SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures