Sequence Similarity Clusters for the Entities in PDB 6H6H

Entity #1 | Chains: A,D
H-2D cell surface glycoprotein protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46969
95 % 7 8 2986 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 8 3044
70 % 10 13 2360
50 % 12 17 1949
40 % 12 17 2017
30 % 12 17 2046
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 144 110
95 % 136 273 69 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 136 273 74
70 % 136 273 83
50 % 671 1104 4
40 % 671 1104 5
30 % 671 1104 9
Entity #3 | Chains: C,F
SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures