Sequence Similarity Clusters for the Entities in PDB 6K61

Entity #1 | Chains: A,a
Photosystem I P700 chlorophyll a apoprotein A1 protein, length: 752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16906
95 % 1 2 15409
90 % 1 2 15146
70 % 20 30 1543
50 % 20 30 1559
40 % 39 60 757
30 % 39 60 797
Entity #10 | Chains: I,i
Photosystem I reaction center subunit VIII protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15268
95 % 1 2 14310
90 % 1 2 14092
70 % 1 2 14898
50 % 1 2 13452
40 % 1 2 12551
30 % 1 2 11458
Entity #11 | Chains: L,l
Photosystem I reaction center subunit XI protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15267
95 % 1 2 16156
90 % 1 2 15897
70 % 1 2 14897
50 % 1 2 13451
40 % 1 2 12550
30 % 1 2 11457
Entity #12 | Chains: M,m
Photosystem I reaction center subunit XII protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51080
95 % 1 1 42227
90 % 1 1 40248
70 % 1 1 35619
50 % 9 10 3431
40 % 9 10 3425
30 % 9 10 3346
Entity #2 | Chains: X,x
Photosystem I 4.8 kDa protein protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16538
95 % 1 2 14834
90 % 1 2 13189
70 % 1 2 13788
50 % 1 2 11459
40 % 1 2 11705
30 % 1 2 10728
Entity #3 | Chains: B,b
Photosystem I P700 chlorophyll a apoprotein A2 1 protein, length: 741 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17232
95 % 1 2 15907
90 % 5 6 5633
70 % 20 30 1527
50 % 20 30 1548
40 % 40 60 757
30 % 40 60 797
Entity #4 | Chains: C,c
Photosystem I iron-sulfur center protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16908
95 % 10 13 2706
90 % 20 27 1631
70 % 20 31 1513
50 % 20 31 1534
40 % 20 31 1587
30 % 20 31 1609
Entity #5 | Chains: D,d
Photosystem I reaction center subunit II protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16907
95 % 1 2 15410
90 % 1 2 15147
70 % 1 2 14270
50 % 16 20 2068
40 % 16 20 2122
30 % 16 20 2144
Entity #6 | Chains: E,e
Photosystem I reaction center subunit IV protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17234
95 % 1 2 15909
90 % 1 4 11292
70 % 1 4 10834
50 % 10 17 2392
40 % 11 18 2380
30 % 11 18 2372
Entity #7 | Chains: F,f
Photosystem I reaction center subunit III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17233
95 % 1 2 15908
90 % 1 2 15642
70 % 1 2 14678
50 % 6 8 4060
40 % 6 8 3998
30 % 6 8 3919
Entity #8 | Chains: J,j
Photosystem I reaction center subunit IX protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15183
95 % 1 2 15912
90 % 1 2 15645
70 % 1 2 14794
50 % 1 2 13275
40 % 1 2 12473
30 % 1 2 11299
Entity #9 | Chains: K,k
Photosystem I reaction center subunit PsaK 1 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17235
95 % 1 2 15911
90 % 1 2 15644
70 % 1 2 14679
50 % 1 3 8751
40 % 1 3 8408
30 % 1 3 7845

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures