Sequence Similarity Clusters for the Entities in PDB 6K61

Entity #1 | Chains: A,a
Photosystem I P700 chlorophyll a apoprotein A1 protein, length: 752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17449
95 % 1 2 16139
90 % 1 2 15847
70 % 24 34 1199
50 % 24 34 1239
40 % 47 68 595
30 % 47 68 620
Entity #10 | Chains: I,i
Photosystem I reaction center subunit VIII protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 15515
95 % 1 2 16415
90 % 1 2 16123
70 % 1 2 15057
50 % 1 2 13634
40 % 1 2 12701
30 % 1 2 11611
Entity #11 | Chains: L,l
Photosystem I reaction center subunit XI protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16788
95 % 1 2 16414
90 % 1 2 14808
70 % 1 2 13958
50 % 1 2 12716
40 % 1 2 11880
30 % 1 2 10889
Entity #12 | Chains: M,m
Photosystem I reaction center subunit XII protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51796
95 % 1 1 42890
90 % 1 1 40795
70 % 1 1 36083
50 % 13 14 2165
40 % 13 14 2192
30 % 13 14 2210
Entity #2 | Chains: X,x
Photosystem I 4.8 kDa protein protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16787
95 % 1 2 16413
90 % 1 2 16121
70 % 1 2 13957
50 % 1 2 11615
40 % 1 2 11879
30 % 1 2 10063
Entity #3 | Chains: B,b
Photosystem I P700 chlorophyll a apoprotein A2 1 protein, length: 741 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17734
95 % 1 2 15624
90 % 7 8 3824
70 % 24 34 1207
50 % 24 34 1245
40 % 48 68 595
30 % 48 68 620
Entity #4 | Chains: C,c
Photosystem I iron-sulfur center protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17448
95 % 14 17 1753
90 % 24 31 1259
70 % 24 35 1194
50 % 24 35 1220
40 % 24 35 1262
30 % 24 35 1302
Entity #5 | Chains: D,d
Photosystem I reaction center subunit II protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17451
95 % 1 2 16141
90 % 1 2 15848
70 % 8 10 3471
50 % 20 24 1516
40 % 20 24 1550
30 % 20 24 1586
Entity #6 | Chains: E,e
Photosystem I reaction center subunit IV protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17450
95 % 1 2 16140
90 % 1 4 12156
70 % 3 6 6155
50 % 14 21 1651
40 % 15 22 1678
30 % 15 22 1708
Entity #7 | Chains: F,f
Photosystem I reaction center subunit III protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17128
95 % 1 2 15625
90 % 1 2 15353
70 % 1 2 14402
50 % 8 10 3070
40 % 8 10 3073
30 % 8 10 3032
Entity #8 | Chains: J,j
Photosystem I reaction center subunit IX protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17130
95 % 1 2 15627
90 % 1 2 15355
70 % 1 2 14403
50 % 1 2 13093
40 % 1 2 12222
30 % 1 2 11188
Entity #9 | Chains: K,k
Photosystem I reaction center subunit PsaK 1 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17129
95 % 1 2 15626
90 % 1 2 15354
70 % 1 2 15218
50 % 1 3 8793
40 % 1 3 8598
30 % 1 3 8013

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures