Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51655
95 % 3 6 9679 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 9604
70 % 3 6 9304
50 % 3 6 8685
40 % 3 6 8318
30 % 3 6 7767
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51656
95 % 2 2 23722 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 16732
70 % 3 5 8386
50 % 3 5 8084
40 % 3 5 7778
30 % 3 5 7264

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures