Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39307
95 % 3 6 10107 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 10024
70 % 3 6 9705
50 % 3 6 9041
40 % 3 6 8658
30 % 3 6 8076
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45148
95 % 2 2 23968 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 17274
70 % 3 5 8612
50 % 3 5 8287
40 % 3 5 7969
30 % 3 5 7451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6K3M 2 A 3LRH intrabody 9606
2 6K64 1 A, B 3LRH intrabody 9606
3 6K6A 1 A, B 3LRH intrabody 9606
4 6K67 1 A, C 3LRH introbody 9606
5 6K6B 1 A 3LRH intrabody 9606
6 6K69 1 A 3LRH intrabody 9606