Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38432
95 % 3 6 9793 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 9704
70 % 3 6 9404
50 % 3 6 8747
40 % 3 6 8384
30 % 3 6 7843
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44089
95 % 2 2 23391 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 17966
70 % 3 5 8465
50 % 3 5 8129
40 % 3 5 7827
30 % 3 5 7333

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6K3M 1 H SpA IgG-binding domain protein,Protein A protein A(1DEE) and n-terminal of huntingtin peptide (3LRH) fusion,protein A(1DEE) and n-terminal of huntingtin peptide (3LRH) fusion 1280
2 6K64 2 C, H Protein A 1280
3 6K6A 2 C, D Engineered Protein A 1280
4 6K6B 2 B Protein A 1280
5 6K68 3 E, H, I, L Protein A 1280