Sequence Similarity Clusters for the Entities in PDB 6K6A

Entity #1 | Chains: A,B
3LRH intrabody protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39364
95 % 3 6 10117 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 6 10029
70 % 3 6 9718
50 % 3 6 9039
40 % 3 6 8661
30 % 3 6 8089
Entity #2 | Chains: C,D
Engineered Protein A protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45114
95 % 2 2 23883 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 3 18415
70 % 3 5 8618
50 % 3 5 7817
40 % 3 5 7971
30 % 3 5 7451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6K3M 1 H SpA IgG-binding domain protein,Protein A protein A(1DEE) and n-terminal of huntingtin peptide (3LRH) fusion,protein A(1DEE) and n-terminal of huntingtin peptide (3LRH) fusion 1280
2 6K64 2 C, H Protein A 1280
3 6K6A 2 C, D Engineered Protein A 1280