Sequence Similarity Clusters for the Entities in PDB 6ORQ

Entity #1 | Chains: A,C,F
RC1 variant of HIV-1 Env glycoprotein gp41 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 2747
95 % 37 62 352
90 % 38 63 358
70 % 51 85 295
50 % 51 85 352
40 % 51 85 363
30 % 51 85 378
Entity #2 | Chains: B,G,I
RC1 variant of HIV-1 Env glycoprotein gp120 protein, length: 497 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 5839
95 % 39 68 302
90 % 39 68 318
70 % 52 95 259
50 % 53 93 309
40 % 53 95 312
30 % 53 95 330
Entity #3 | Chains: D,H,J
Ab275MUR antibody Fab heavy chain protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30325
95 % 1 1 26816
90 % 1 1 24971
70 % 488 543 8
50 % 718 837 5
40 % 719 839 6
30 % 1037 1250 5
Entity #4 | Chains: E,K,L
Ab275MUR antibody Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 30326
95 % 10 11 5086
90 % 104 120 153
70 % 2291 2416 2
50 % 2916 3067 2
40 % 2916 3067 2
30 % 5913 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures