6ORQ

Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch antibody Ab275MUR


Sequence Similarity Clusters for the Entities in PDB 6ORQ

Entity #1 | Chains: A,C,F
RC1 variant of HIV-1 Env glycoprotein gp41 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 2435
95 % 55 80 266
90 % 56 81 276
70 % 75 109 228
50 % 75 109 240
40 % 75 109 248
30 % 75 109 261
Entity #2 | Chains: B,G,I
RC1 variant of HIV-1 Env glycoprotein gp120 protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4986
95 % 54 83 263
90 % 54 83 274
70 % 190 233 88
50 % 78 118 212
40 % 78 120 217
30 % 78 120 226
Entity #3 | Chains: D,H,J
Ab275MUR antibody Fab heavy chain protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31950
95 % 1 1 28189
90 % 1 1 27219
70 % 583 641 7
50 % 805 917 5
40 % 834 957 6
30 % 1186 1402 4
Entity #4 | Chains: E,K,L
Ab275MUR antibody Fab light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32016
95 % 12 13 3975
90 % 105 121 194
70 % 2447 2578 2
50 % 3143 3301 2
40 % 3143 3301 2
30 % 6390 6719 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures