6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12948
95 % 3 7 12330
90 % 3 7 12148
70 % 3 7 11583
50 % 3 11 7015
40 % 3 11 6967
30 % 3 11 6354
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12312
95 % 3 7 12207
90 % 3 7 12031
70 % 3 7 11471
50 % 3 7 10510
40 % 3 7 9901
30 % 3 7 9154
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12624
95 % 3 7 12805
90 % 3 7 12622
70 % 3 7 11997
50 % 3 7 10999
40 % 3 7 10364
30 % 3 7 9548
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12754
95 % 3 7 12648
90 % 3 7 12466
70 % 3 7 11875
50 % 3 7 10877
40 % 3 7 10245
30 % 3 9 7553
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12353
95 % 3 7 12064
90 % 3 7 11894
70 % 3 7 11334
50 % 3 7 10384
40 % 3 7 9785
30 % 3 7 9048
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12919
95 % 3 7 12804
90 % 3 7 12621
70 % 3 7 11996
50 % 3 7 10998
40 % 3 7 10363
30 % 3 11 6377
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12163
95 % 3 7 12079
90 % 3 7 11910
70 % 3 7 11354
50 % 3 7 10405
40 % 3 7 9800
30 % 3 7 9060
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11344
95 % 3 8 10354
90 % 3 8 11012
70 % 3 8 10574
50 % 3 12 6853
40 % 3 12 6625
30 % 3 12 6215
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12755
95 % 3 7 12649
90 % 3 7 12467
70 % 3 7 11876
50 % 3 7 10878
40 % 3 7 10246
30 % 3 7 9441
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5012
95 % 3 7 5830
90 % 3 7 5872
70 % 3 7 5803
50 % 3 11 3405
40 % 3 11 3396
30 % 3 11 3315
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12918
95 % 3 7 12532
90 % 3 7 12620
70 % 3 7 11995
50 % 3 11 7227
40 % 3 15 4973
30 % 3 15 4919
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13103
95 % 3 7 12970
90 % 3 7 12792
70 % 3 7 11786
50 % 3 7 11157
40 % 3 7 10512
30 % 3 7 9684
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13140
95 % 3 7 13017
90 % 3 7 12837
70 % 3 7 12202
50 % 3 7 11197
40 % 3 7 10545
30 % 3 7 9710
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5061
95 % 3 7 5872
90 % 3 7 5914
70 % 3 7 5836
50 % 12 34 1277
40 % 13 35 1271
30 % 12 34 1367
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13030
95 % 3 7 12901
90 % 3 7 12712
70 % 3 7 12089
50 % 3 7 11089
40 % 3 7 10453
30 % 3 7 9632
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13031
95 % 3 7 12902
90 % 3 7 12713
70 % 3 7 12090
50 % 3 7 11090
40 % 3 7 10454
30 % 3 7 9633
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13108
95 % 3 7 12977
90 % 3 7 12799
70 % 3 7 12165
50 % 3 7 11163
40 % 3 11 7014
30 % 3 11 6565
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10827
95 % 3 8 11019
90 % 3 8 10910
70 % 3 8 10480
50 % 3 12 6545
40 % 3 12 6348
30 % 3 12 5987
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11654
95 % 3 8 11686
90 % 3 8 11538
70 % 3 8 11016
50 % 3 11 7085
40 % 3 11 6986
30 % 3 11 6420
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13029
95 % 3 7 12900
90 % 3 7 12711
70 % 3 7 12088
50 % 3 7 11088
40 % 3 7 10452
30 % 3 7 9630
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12883
95 % 3 7 12767
90 % 3 7 12763
70 % 3 7 11960
50 % 3 7 10961
40 % 3 9 8255
30 % 3 9 7699
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 4944
95 % 3 7 5763
90 % 3 7 5814
70 % 8 17 2244
50 % 8 17 2285
40 % 8 17 2311
30 % 8 17 2314
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12396
95 % 3 7 12297
90 % 3 7 12119
70 % 3 7 11554
50 % 3 7 10582
40 % 3 7 9971
30 % 3 7 9214
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8419
95 % 3 8 9253
90 % 3 8 9200
70 % 3 11 6646
50 % 3 11 6367
40 % 3 11 6194
30 % 3 11 5857
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13019
95 % 3 7 12344
90 % 3 7 12161
70 % 3 7 11599
50 % 3 7 11081
40 % 3 7 10012
30 % 3 7 9622
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4159
95 % 3 8 4822
90 % 3 8 4888
70 % 3 8 4849
50 % 3 8 4836
40 % 3 8 4770
30 % 3 8 4607
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12439
95 % 3 7 12343
90 % 3 7 12707
70 % 3 7 11598
50 % 3 7 10629
40 % 3 7 10011
30 % 3 7 9253
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18410
95 % 3 5 17916
90 % 3 5 17579
70 % 41 81 469
50 % 47 133 351
40 % 47 137 356
30 % 47 137 368
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18104
95 % 2 5 16917
90 % 2 5 16628
70 % 44 156 266
50 % 46 166 266
40 % 46 170 270
30 % 46 175 273
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12502
95 % 3 7 12403
90 % 3 7 12226
70 % 7 86 659
50 % 48 176 232
40 % 48 176 248
30 % 48 176 265
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19403
95 % 2 5 18023
90 % 2 5 17679
70 % 6 76 748
50 % 45 157 312
40 % 45 162 314
30 % 45 162 329
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13096
95 % 3 7 12965
90 % 3 7 12787
70 % 3 7 12158
50 % 45 163 291
40 % 45 163 306
30 % 47 166 304
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19444
95 % 2 5 16916
90 % 2 5 16627
70 % 40 83 455
50 % 46 165 269
40 % 46 169 272
30 % 46 169 293
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 8628
95 % 4 8 9190
90 % 4 8 9137
70 % 4 8 8895
50 % 4 8 8314
40 % 4 8 7968
30 % 4 8 7443
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12440
95 % 3 7 12345
90 % 3 7 12162
70 % 46 160 258
50 % 48 175 236
40 % 48 179 242
30 % 48 179 255
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12595
95 % 3 7 12500
90 % 3 7 12315
70 % 46 165 249
50 % 48 172 245
40 % 48 177 247
30 % 48 177 260
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12934
95 % 3 7 12329
90 % 7 67 831
70 % 48 173 230
50 % 48 174 238
40 % 48 174 254
30 % 48 174 274
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12820
95 % 3 7 12766
90 % 3 7 12579
70 % 3 7 11739
50 % 48 173 240
40 % 48 177 246
30 % 48 178 257
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18358
95 % 2 5 18056
90 % 2 5 17192
70 % 41 85 445
50 % 47 172 247
40 % 47 172 262
30 % 47 172 281
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12787
95 % 3 7 12669
90 % 3 7 12486
70 % 47 176 238
50 % 49 178 231
40 % 50 183 238
30 % 399 725 24
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12596
95 % 3 7 12501
90 % 3 7 12316
70 % 48 179 208
50 % 48 185 220
40 % 48 185 237
30 % 48 185 248
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 17989
95 % 2 5 17074
90 % 2 5 16544
70 % 2 5 15462
50 % 44 167 275
40 % 44 167 289
30 % 44 167 312
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12501
95 % 3 7 12402
90 % 3 7 12225
70 % 46 166 247
50 % 48 173 243
40 % 48 174 253
30 % 48 174 272
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12324
95 % 3 7 12219
90 % 3 7 12044
70 % 3 7 11482
50 % 3 7 10520
40 % 3 7 9910
30 % 3 7 9162
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12344
95 % 3 7 12233
90 % 3 7 12059
70 % 3 7 11322
50 % 3 7 10529
40 % 3 7 9919
30 % 3 7 9172
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 29068
95 % 1 4 24977
90 % 1 4 24173
70 % 1 4 22072
50 % 1 4 19467
40 % 1 4 17819
30 % 1 4 15965
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 29402
95 % 1 4 24978
90 % 1 4 24174
70 % 1 4 22073
50 % 1 4 19468
40 % 1 4 17820
30 % 1 4 15867
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25362
95 % 2 4 20012
90 % 2 4 21636
70 % 2 4 18054
50 % 2 4 17607
40 % 2 4 16199
30 % 2 4 13505
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19776
95 % 2 4 18308
90 % 2 4 20079
70 % 2 4 18511
50 % 2 4 16506
40 % 2 4 15267
30 % 2 4 13506
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17311
95 % 3 6 16254
90 % 3 6 15983
70 % 3 6 14966
50 % 3 6 13541
40 % 3 6 12597
30 % 3 6 11483
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6862
95 % 3 6 7126
90 % 3 6 7111
70 % 3 6 6984
50 % 3 6 6646
40 % 3 6 6432
30 % 3 6 6062
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17170
95 % 3 6 16255
90 % 3 6 15886
70 % 3 6 13523
50 % 3 6 13459
40 % 3 6 12598
30 % 3 6 10546
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15934
95 % 3 6 15197
90 % 3 6 14954
70 % 46 158 259
50 % 48 167 262
40 % 48 173 259
30 % 48 173 278
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12805
95 % 3 7 12985
90 % 3 7 12793
70 % 3 7 12160
50 % 3 7 11158
40 % 3 9 7931
30 % 3 9 7392
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 13874
95 % 3 6 13131
90 % 3 6 12950
70 % 3 6 12309
50 % 3 6 11288
40 % 3 6 10630
30 % 3 14 5147
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30457
95 % 2 3 25148
90 % 2 3 24915
70 % 2 3 22230
50 % 2 3 19603
40 % 2 3 18330
30 % 2 3 16075
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26344
95 % 2 4 22240
90 % 2 4 21652
70 % 2 4 19861
50 % 2 4 17621
40 % 2 4 16214
30 % 2 4 14603
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 14733
95 % 3 6 13655
90 % 3 6 13465
70 % 3 6 13256
50 % 3 6 12114
40 % 3 6 11336
30 % 3 6 10383
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10788
95 % 3 8 10978
90 % 3 8 10991
70 % 3 8 10558
50 % 3 8 9649
40 % 3 8 9245
30 % 3 8 8567
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13102
95 % 3 7 12969
90 % 3 7 12371
70 % 3 7 11785
50 % 3 7 11156
40 % 3 7 10168
30 % 3 7 9683
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12423
95 % 3 7 12331
90 % 3 7 12149
70 % 3 7 11584
50 % 3 7 11017
40 % 3 11 6814
30 % 3 11 6378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures