6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12807
95 % 3 7 13105
90 % 3 7 12935
70 % 3 7 12278
50 % 3 11 7303
40 % 3 11 7052
30 % 3 11 6631
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12450
95 % 3 7 13264
90 % 3 7 12282
70 % 3 7 11508
50 % 3 7 10667
40 % 3 7 10050
30 % 3 7 9186
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13205
95 % 3 7 12825
90 % 3 7 12679
70 % 3 7 12036
50 % 3 7 11008
40 % 3 7 10372
30 % 3 7 9590
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12492
95 % 3 7 12513
90 % 3 7 12109
70 % 3 7 11521
50 % 3 7 10526
40 % 3 7 9919
30 % 3 9 7662
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13399
95 % 3 7 12801
90 % 3 7 13048
70 % 3 7 12388
50 % 3 7 11343
40 % 3 7 10669
30 % 3 7 9565
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12913
95 % 3 7 12261
90 % 3 7 12096
70 % 3 7 11507
50 % 3 7 10511
40 % 3 7 9908
30 % 3 11 6532
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12595
95 % 3 7 12696
90 % 3 7 12946
70 % 3 7 11917
50 % 3 7 11256
40 % 3 7 10583
30 % 3 7 9782
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11962
95 % 3 8 11362
90 % 3 8 11184
70 % 3 8 10740
50 % 3 12 6342
40 % 3 12 6156
30 % 3 12 5859
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12361
95 % 3 7 12270
90 % 3 7 12110
70 % 3 7 11522
50 % 3 7 10527
40 % 3 7 9920
30 % 3 7 9196
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5204
95 % 3 7 5946
90 % 3 7 5968
70 % 3 7 5898
50 % 3 11 3417
40 % 3 11 3413
30 % 3 11 3342
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12750
95 % 3 7 12703
90 % 3 7 12824
70 % 3 7 12162
50 % 3 11 7096
40 % 3 14 5606
30 % 3 14 5156
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12936
95 % 3 7 12741
90 % 3 7 12580
70 % 3 7 11950
50 % 3 7 10930
40 % 3 7 9947
30 % 3 7 9519
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13176
95 % 3 7 12782
90 % 3 7 12332
70 % 3 7 11980
50 % 3 7 10957
40 % 3 7 10314
30 % 3 7 9535
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 4862
95 % 3 7 5825
90 % 3 7 6160
70 % 3 7 5776
50 % 12 34 1312
40 % 13 35 1305
30 % 12 34 1399
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13374
95 % 3 7 13183
90 % 3 7 13011
70 % 3 7 12354
50 % 3 7 11314
40 % 3 7 10637
30 % 3 7 9826
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13177
95 % 3 7 12783
90 % 3 7 12614
70 % 3 7 11981
50 % 3 7 10958
40 % 3 7 10315
30 % 3 7 9536
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12803
95 % 3 7 13096
90 % 3 7 12925
70 % 3 7 12270
50 % 3 7 11242
40 % 3 11 7080
30 % 3 11 6656
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10651
95 % 3 8 11898
90 % 3 8 11739
70 % 3 8 10832
50 % 3 12 6918
40 % 3 12 6697
30 % 3 12 6303
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11677
95 % 3 8 11232
90 % 3 8 11063
70 % 3 8 10641
50 % 3 11 7325
40 % 3 11 7074
30 % 3 11 6653
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13373
95 % 3 7 13182
90 % 3 7 13010
70 % 3 7 12353
50 % 3 7 11313
40 % 3 7 10636
30 % 3 7 9825
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12802
95 % 3 7 13095
90 % 3 7 12141
70 % 3 7 12269
50 % 3 7 10554
40 % 3 9 8437
30 % 3 9 7447
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 4914
95 % 3 7 5884
90 % 3 7 5913
70 % 8 17 2288
50 % 8 17 2325
40 % 8 17 2354
30 % 8 17 2350
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12444
95 % 3 7 12427
90 % 3 7 12277
70 % 3 7 11664
50 % 3 7 10502
40 % 3 7 10042
30 % 3 7 9294
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8823
95 % 3 8 9539
90 % 3 8 9807
70 % 3 11 6910
50 % 3 11 6905
40 % 3 11 6686
30 % 3 11 6295
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12596
95 % 3 7 12697
90 % 3 7 12537
70 % 3 7 11918
50 % 3 7 10900
40 % 3 7 10262
30 % 3 7 9496
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4089
95 % 3 8 5064
90 % 3 8 5136
70 % 3 8 5246
50 % 3 8 5055
40 % 3 8 4761
30 % 3 8 4744
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12804
95 % 3 7 13098
90 % 3 7 12927
70 % 3 7 12387
50 % 3 7 10565
40 % 3 7 10574
30 % 3 7 9773
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 17704
95 % 3 5 16634
90 % 3 5 16344
70 % 41 81 488
50 % 45 136 359
40 % 47 143 354
30 % 47 143 369
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19129
95 % 2 5 17147
90 % 2 5 16689
70 % 44 162 266
50 % 46 172 262
40 % 46 176 270
30 % 46 181 272
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13367
95 % 3 7 13170
90 % 3 7 13001
70 % 7 92 635
50 % 48 182 232
40 % 48 182 247
30 % 48 182 263
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 17659
95 % 2 5 16554
90 % 2 5 16271
70 % 6 82 717
50 % 45 163 305
40 % 45 168 307
30 % 45 168 329
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12516
95 % 3 7 12266
90 % 3 7 12076
70 % 3 7 11802
50 % 45 169 284
40 % 45 169 301
30 % 47 172 300
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19541
95 % 2 5 17706
90 % 2 5 17378
70 % 40 83 473
50 % 46 171 264
40 % 46 175 272
30 % 46 175 292
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9234
95 % 4 8 9632
90 % 4 8 9553
70 % 4 8 9211
50 % 4 8 8604
40 % 4 8 8455
30 % 4 8 7735
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13273
95 % 3 7 12520
90 % 3 7 12358
70 % 46 166 254
50 % 48 181 234
40 % 48 185 244
30 % 48 185 257
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13125
95 % 3 7 12668
90 % 3 7 12512
70 % 46 171 251
50 % 48 178 244
40 % 48 183 246
30 % 48 183 260
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12490
95 % 3 7 12512
90 % 7 73 777
70 % 48 179 230
50 % 48 180 240
40 % 48 180 254
30 % 48 180 271
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12682
95 % 3 7 12859
90 % 3 7 12699
70 % 3 7 12055
50 % 48 173 255
40 % 48 177 259
30 % 48 178 277
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19718
95 % 2 5 17990
90 % 2 5 17437
70 % 41 85 465
50 % 47 178 243
40 % 47 178 257
30 % 47 178 278
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13126
95 % 3 7 12894
90 % 3 7 12513
70 % 47 182 232
50 % 50 189 231
40 % 49 185 245
30 % 403 741 22
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13127
95 % 3 7 12669
90 % 3 7 12514
70 % 48 185 213
50 % 48 191 226
40 % 48 191 238
30 % 48 191 248
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19949
95 % 2 5 17830
90 % 2 5 17510
70 % 2 5 16417
50 % 44 173 273
40 % 44 173 289
30 % 44 173 308
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12995
95 % 3 7 12416
90 % 3 7 12258
70 % 46 172 248
50 % 48 179 241
40 % 48 180 250
30 % 48 180 268
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13226
95 % 3 7 12871
90 % 3 7 12713
70 % 3 7 12068
50 % 3 7 11041
40 % 3 7 10403
30 % 3 7 9621
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12853
95 % 3 7 13104
90 % 3 7 12934
70 % 3 7 12277
50 % 3 7 11249
40 % 3 7 10579
30 % 3 7 9778
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 29560
95 % 1 4 24868
90 % 1 4 20782
70 % 1 4 19493
50 % 1 4 17364
40 % 1 4 17754
30 % 1 4 15972
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24979
95 % 1 4 25473
90 % 1 4 24631
70 % 1 4 22471
50 % 1 4 19794
40 % 1 4 18115
30 % 1 4 16261
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26305
95 % 2 4 22648
90 % 2 4 19895
70 % 2 4 18366
50 % 2 4 17925
40 % 2 4 15193
30 % 2 4 14856
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 27956
95 % 2 4 22659
90 % 2 4 22049
70 % 2 4 20195
50 % 2 4 17671
40 % 2 4 16213
30 % 2 4 14864
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16089
95 % 3 6 14148
90 % 3 6 13952
70 % 3 6 13184
50 % 3 6 12009
40 % 3 6 11948
30 % 3 6 10374
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6531
95 % 3 6 6787
90 % 3 6 7147
70 % 3 6 7022
50 % 3 6 6644
40 % 3 6 6445
30 % 3 6 5880
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 14791
95 % 3 6 16342
90 % 3 6 15207
70 % 3 6 15044
50 % 3 6 12938
40 % 3 6 12671
30 % 3 6 11078
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16090
95 % 3 6 15232
90 % 3 6 14228
70 % 46 164 260
50 % 48 173 256
40 % 48 179 255
30 % 48 179 275
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12806
95 % 3 7 13103
90 % 3 7 12933
70 % 3 7 12276
50 % 3 7 11248
40 % 3 9 8005
30 % 3 9 7506
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16091
95 % 3 6 14149
90 % 3 6 13953
70 % 3 6 13185
50 % 3 6 12010
40 % 3 6 11275
30 % 3 14 5101
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34422
95 % 2 3 27207
90 % 2 3 26331
70 % 2 3 23870
50 % 2 3 20991
40 % 2 3 19175
30 % 2 3 17207
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24510
95 % 2 4 24821
90 % 2 4 24029
70 % 2 4 21948
50 % 2 4 19369
40 % 2 4 17722
30 % 2 4 15942
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16700
95 % 3 6 15100
90 % 3 6 14873
70 % 3 6 13979
50 % 3 6 12681
40 % 3 6 11867
30 % 3 6 10882
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11020
95 % 3 8 10148
90 % 3 8 10060
70 % 3 8 9733
50 % 3 8 9058
40 % 3 8 8658
30 % 3 8 8076
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12937
95 % 3 7 12309
90 % 3 7 12151
70 % 3 7 11951
50 % 3 7 10561
40 % 3 7 9950
30 % 3 7 9221
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12445
95 % 3 7 12428
90 % 3 7 12558
70 % 3 7 11653
50 % 3 7 10661
40 % 3 11 6878
30 % 3 11 6463

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures