6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13668
95 % 3 7 13498
90 % 3 7 13330
70 % 3 7 12636
50 % 3 11 7489
40 % 3 11 7221
30 % 3 11 6777
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12758
95 % 3 7 12565
90 % 3 7 12384
70 % 3 7 11793
50 % 3 7 10756
40 % 3 7 10327
30 % 3 7 9547
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12714
95 % 3 7 12731
90 % 3 7 12557
70 % 3 7 11940
50 % 3 7 10889
40 % 3 7 10256
30 % 3 7 9482
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13177
95 % 3 7 12554
90 % 3 7 12565
70 % 3 7 11946
50 % 3 7 10740
40 % 3 7 10116
30 % 3 9 7945
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13696
95 % 3 7 13549
90 % 3 7 13373
70 % 3 7 12681
50 % 3 7 11577
40 % 3 7 10721
30 % 3 7 9895
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12713
95 % 3 7 12730
90 % 3 7 12556
70 % 3 7 11939
50 % 3 7 10888
40 % 3 7 10255
30 % 3 11 6661
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13496
95 % 3 7 13160
90 % 3 7 13006
70 % 3 7 12321
50 % 3 7 11236
40 % 3 7 10588
30 % 3 7 9778
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12208
95 % 3 8 11623
90 % 3 8 11474
70 % 3 8 11000
50 % 3 12 6976
40 % 3 12 6726
30 % 3 12 6336
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12864
95 % 3 7 12528
90 % 3 7 12855
70 % 3 7 12498
50 % 3 7 11415
40 % 3 7 10475
30 % 3 7 9683
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5463
95 % 3 7 6274
90 % 3 7 6288
70 % 3 7 6205
50 % 3 11 3538
40 % 3 11 3519
30 % 3 11 3445
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13028
95 % 3 7 13313
90 % 3 7 12867
70 % 3 7 12463
50 % 3 11 7499
40 % 3 15 5379
30 % 3 15 5135
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13487
95 % 3 7 13145
90 % 3 7 12994
70 % 3 7 12308
50 % 3 7 11222
40 % 3 7 10574
30 % 3 7 9765
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13675
95 % 3 7 13504
90 % 3 7 13334
70 % 3 7 12643
50 % 3 7 11544
40 % 3 7 10865
30 % 3 7 10029
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5451
95 % 3 7 6257
90 % 3 7 6273
70 % 3 7 5980
50 % 12 34 1358
40 % 13 35 1351
30 % 12 34 1438
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13305
95 % 3 7 13105
90 % 3 7 12977
70 % 3 7 12265
50 % 3 7 10949
40 % 3 7 10525
30 % 3 7 9728
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13458
95 % 3 7 13106
90 % 3 7 12948
70 % 3 7 12266
50 % 3 7 11183
40 % 3 7 10526
30 % 3 7 9729
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13074
95 % 3 7 13414
90 % 3 7 13244
70 % 3 7 12553
50 % 3 7 11460
40 % 3 11 7226
30 % 3 11 6780
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10711
95 % 3 8 11881
90 % 3 8 11737
70 % 3 8 11210
50 % 3 12 6918
40 % 3 12 6667
30 % 3 12 6294
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12140
95 % 3 8 11799
90 % 3 8 11667
70 % 3 8 9927
50 % 3 11 7321
40 % 3 11 7065
30 % 3 11 6630
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13674
95 % 3 7 13503
90 % 3 7 13333
70 % 3 7 12642
50 % 3 7 11543
40 % 3 7 10864
30 % 3 7 10028
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12740
95 % 3 7 13277
90 % 3 7 13114
70 % 3 7 12421
50 % 3 7 11341
40 % 3 9 8547
30 % 3 9 7978
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5342
95 % 3 7 6048
90 % 3 7 6076
70 % 8 17 2342
50 % 8 17 2379
40 % 8 17 2440
30 % 8 17 2402
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13317
95 % 3 7 12840
90 % 3 7 12661
70 % 3 7 12035
50 % 3 7 10969
40 % 3 7 10337
30 % 3 7 9555
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8797
95 % 3 8 9399
90 % 3 8 9313
70 % 3 11 7530
50 % 3 11 6299
40 % 3 11 6119
30 % 3 11 5834
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13663
95 % 3 7 13492
90 % 3 7 13323
70 % 3 7 12632
50 % 3 7 11532
40 % 3 7 10858
30 % 3 7 10021
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4429
95 % 3 8 5070
90 % 3 8 5130
70 % 3 8 5085
50 % 3 8 4928
40 % 3 8 5022
30 % 3 8 4657
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12791
95 % 3 7 12887
90 % 3 7 12706
70 % 3 7 12084
50 % 3 7 11015
40 % 3 7 10379
30 % 3 7 9585
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18053
95 % 3 5 16957
90 % 3 5 16663
70 % 46 86 472
50 % 51 142 350
40 % 53 149 350
30 % 53 149 367
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18486
95 % 2 5 17636
90 % 2 5 17307
70 % 50 168 265
50 % 52 178 261
40 % 52 182 266
30 % 56 191 259
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13354
95 % 3 7 12910
90 % 3 7 12733
70 % 8 93 634
50 % 54 188 235
40 % 54 188 245
30 % 54 188 263
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20142
95 % 2 5 18446
90 % 2 5 18101
70 % 7 83 721
50 % 51 169 303
40 % 51 174 302
30 % 51 174 328
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12761
95 % 3 7 13322
90 % 3 7 13155
70 % 3 7 12029
50 % 51 175 285
40 % 51 175 299
30 % 53 178 300
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18485
95 % 2 5 17635
90 % 2 5 16728
70 % 45 88 463
50 % 52 177 264
40 % 52 181 267
30 % 52 181 289
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9635
95 % 4 8 10152
90 % 4 8 10065
70 % 4 8 9748
50 % 4 8 9074
40 % 4 8 8684
30 % 4 8 8107
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13321
95 % 3 7 12849
90 % 3 7 12670
70 % 52 172 258
50 % 54 187 237
40 % 58 195 237
30 % 58 195 251
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13353
95 % 3 7 12909
90 % 3 7 12732
70 % 52 177 250
50 % 54 184 246
40 % 58 192 241
30 % 58 193 254
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13511
95 % 3 7 13193
90 % 7 73 805
70 % 54 185 226
50 % 54 186 240
40 % 54 186 250
30 % 54 186 269
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13399
95 % 3 7 12992
90 % 3 7 12817
70 % 3 7 12172
50 % 54 179 255
40 % 58 187 249
30 % 58 188 264
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18812
95 % 2 5 18447
90 % 2 5 18102
70 % 46 90 443
50 % 53 184 242
40 % 53 184 256
30 % 53 184 273
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13264
95 % 3 7 12614
90 % 3 7 13001
70 % 53 188 231
50 % 60 199 221
40 % 60 199 233
30 % 422 760 22
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13651
95 % 3 7 13481
90 % 3 7 13312
70 % 54 191 212
50 % 58 201 215
40 % 58 201 230
30 % 58 201 245
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18852
95 % 2 5 18301
90 % 2 5 18054
70 % 45 90 451
50 % 50 179 271
40 % 50 179 283
30 % 50 179 308
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13265
95 % 3 7 12717
90 % 3 7 12543
70 % 52 178 248
50 % 58 189 234
40 % 58 190 244
30 % 58 190 258
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13400
95 % 3 7 13215
90 % 3 7 12818
70 % 3 7 12173
50 % 3 7 11339
40 % 3 7 10448
30 % 3 7 9661
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13204
95 % 3 7 12611
90 % 3 7 12427
70 % 3 7 11841
50 % 3 7 10791
40 % 3 7 10163
30 % 3 7 9399
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 30597
95 % 1 4 26083
90 % 1 4 25226
70 % 1 4 22965
50 % 1 4 20205
40 % 1 4 18511
30 % 1 4 16591
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 23820
95 % 1 4 25693
90 % 1 4 22989
70 % 1 4 21013
50 % 1 4 18605
40 % 1 4 17120
30 % 1 4 15430
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28642
95 % 2 4 23242
90 % 2 4 22546
70 % 2 4 20627
50 % 2 4 18299
40 % 2 4 16847
30 % 2 4 15188
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 23821
95 % 2 4 25696
90 % 2 4 22990
70 % 2 4 22658
50 % 2 4 19958
40 % 2 4 17121
30 % 2 4 15431
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15152
95 % 3 6 14525
90 % 3 6 15537
70 % 3 6 14625
50 % 3 6 13218
40 % 3 6 11556
30 % 3 6 11818
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7171
95 % 3 6 7817
90 % 3 6 7747
70 % 3 6 7594
50 % 3 6 7136
40 % 3 6 6888
30 % 3 6 6466
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17961
95 % 3 6 16809
90 % 3 6 16224
70 % 3 6 15458
50 % 3 6 14030
40 % 3 6 11949
30 % 3 6 10961
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17036
95 % 3 6 14219
90 % 3 6 15168
70 % 52 170 260
50 % 54 179 258
40 % 58 188 247
30 % 58 189 260
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13689
95 % 3 7 13540
90 % 3 7 13366
70 % 3 7 12675
50 % 3 7 11572
40 % 3 9 8172
30 % 3 9 7632
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17087
95 % 3 6 15456
90 % 3 6 15232
70 % 3 6 14339
50 % 3 6 12977
40 % 3 6 12127
30 % 3 14 5423
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34993
95 % 2 3 27442
90 % 2 3 26472
70 % 2 3 24054
50 % 2 3 21122
40 % 2 3 19354
30 % 2 3 17340
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25762
95 % 2 4 19188
90 % 2 4 18797
70 % 2 4 17440
50 % 2 4 15681
40 % 2 4 14575
30 % 2 4 13242
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17037
95 % 3 6 14220
90 % 3 6 15169
70 % 3 6 14285
50 % 3 6 13062
40 % 3 6 12090
30 % 3 6 11089
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11560
95 % 3 8 10878
90 % 3 8 10780
70 % 3 8 10386
50 % 3 8 9607
40 % 3 8 9159
30 % 3 8 8520
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13667
95 % 3 7 13497
90 % 3 7 13329
70 % 3 7 12229
50 % 3 7 11535
40 % 3 7 10860
30 % 3 7 10024
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12715
95 % 3 7 12732
90 % 3 7 12558
70 % 3 7 11932
50 % 3 7 10890
40 % 3 11 6923
30 % 3 11 6589

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 12 UO Utp15 209285
2 6RXU 12 UO Utp15 209285
3 6RXV 12 UO Utp15 209285
4 6RXX 49 UO Utp15 209285
5 6RXY 12 UO Utp15 209285
6 6RXZ 12 UO Utp15 209285
7 5OQL 12 L Utp15 209285