6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14238
95 % 3 7 13535
90 % 3 7 13341
70 % 3 7 12585
50 % 17 25 3306
40 % 17 25 3285
30 % 17 25 3248
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14301
95 % 3 7 13633
90 % 3 7 13440
70 % 3 7 12673
50 % 3 7 11545
40 % 3 7 10853
30 % 3 7 10021
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13752
95 % 3 7 14028
90 % 3 7 13816
70 % 3 7 13003
50 % 3 7 11647
40 % 3 7 10735
30 % 3 7 10288
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14529
95 % 3 7 14113
90 % 3 7 13911
70 % 3 7 13097
50 % 3 7 11942
40 % 3 7 11223
30 % 16 22 3783
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13865
95 % 3 7 13978
90 % 3 7 13773
70 % 3 7 12965
50 % 3 7 11836
40 % 3 7 11117
30 % 3 7 10259
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14212
95 % 3 7 13471
90 % 3 7 13276
70 % 3 7 12517
50 % 3 7 11413
40 % 3 7 10720
30 % 16 24 3407
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13604
95 % 3 7 13755
90 % 3 7 13759
70 % 3 7 12539
50 % 3 7 11429
40 % 3 7 10736
30 % 3 7 9916
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12095
95 % 3 8 12459
90 % 3 8 12311
70 % 3 8 11688
50 % 17 26 3254
40 % 17 26 3235
30 % 17 26 3195
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13866
95 % 3 7 13979
90 % 3 7 13249
70 % 3 7 12966
50 % 3 7 12365
40 % 3 7 11486
30 % 3 7 10691
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5583
95 % 3 7 6485
90 % 3 7 6535
70 % 3 7 6648
50 % 16 24 1619
40 % 16 24 1652
30 % 16 24 1686
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13603
95 % 3 7 13491
90 % 3 7 13318
70 % 3 7 12538
50 % 16 24 3589
40 % 29 41 1976
30 % 29 41 1989
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14479
95 % 3 7 14529
90 % 3 7 14319
70 % 3 7 13466
50 % 3 7 11859
40 % 3 7 11140
30 % 3 7 10642
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14742
95 % 3 7 14537
90 % 3 7 13640
70 % 3 7 12853
50 % 3 7 11720
40 % 3 7 11009
30 % 3 7 10646
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5549
95 % 3 7 6630
90 % 3 7 6662
70 % 3 7 6577
50 % 25 47 956
40 % 26 48 957
30 % 25 47 1025
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14241
95 % 3 7 14577
90 % 3 7 13343
70 % 3 7 13512
50 % 3 7 11593
40 % 3 7 10894
30 % 3 7 9955
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14494
95 % 3 7 14536
90 % 3 7 13842
70 % 3 7 13473
50 % 3 7 11887
40 % 3 7 11555
30 % 3 7 10645
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13836
95 % 3 7 14314
90 % 3 7 14101
70 % 3 7 13254
50 % 3 7 12098
40 % 18 26 3269
30 % 18 26 3234
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13441
95 % 3 8 13233
90 % 3 8 13207
70 % 3 8 12329
50 % 17 21 3157
40 % 17 26 3144
30 % 17 26 3110
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13146
95 % 3 8 12758
90 % 3 8 12604
70 % 3 8 11944
50 % 18 26 3194
40 % 18 8 3184
30 % 18 26 3145
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14026
95 % 3 7 14280
90 % 3 7 14062
70 % 3 7 13228
50 % 3 7 12067
40 % 3 7 11343
30 % 3 7 10450
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14580
95 % 3 7 13510
90 % 3 7 13314
70 % 3 7 12563
50 % 3 7 12041
40 % 15 21 4011
30 % 15 21 3820
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5362
95 % 3 7 6615
90 % 3 7 6646
70 % 23 32 1239
50 % 23 32 1287
40 % 23 32 1323
30 % 23 32 1361
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14267
95 % 3 7 14449
90 % 3 7 13397
70 % 3 7 13390
50 % 3 7 12231
40 % 3 7 11487
30 % 18 23 3625
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 9687
95 % 3 8 10742
90 % 3 8 10662
70 % 10 18 4656
50 % 10 18 4433
40 % 10 18 4363
30 % 10 18 4273
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13755
95 % 3 7 13763
90 % 3 7 13570
70 % 3 7 12782
50 % 3 7 11654
40 % 3 7 10952
30 % 3 7 10106
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4535
95 % 3 8 5487
90 % 3 8 5545
70 % 3 8 5539
50 % 11 16 2627
40 % 11 16 2623
30 % 11 16 2613
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14331
95 % 3 7 13689
90 % 3 7 13496
70 % 3 7 12716
50 % 3 7 11586
40 % 3 7 10888
30 % 3 7 10049
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 19808
95 % 3 5 18724
90 % 3 5 18378
70 % 70 110 429
50 % 72 116 442
40 % 101 197 297
30 % 101 197 307
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19871
95 % 2 5 18823
90 % 2 5 18472
70 % 101 219 240
50 % 103 229 236
40 % 103 233 235
30 % 110 245 230
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14330
95 % 3 7 13771
90 % 3 7 13495
70 % 33 118 537
50 % 106 240 221
40 % 106 275 223
30 % 106 239 233
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21635
95 % 2 5 18996
90 % 2 5 19298
70 % 32 108 578
50 % 102 220 255
40 % 102 225 250
30 % 102 225 260
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13592
95 % 3 7 13472
90 % 3 7 13972
70 % 3 7 13155
50 % 103 227 245
40 % 103 227 244
30 % 105 230 247
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19424
95 % 2 5 18388
90 % 2 5 17820
70 % 71 114 408
50 % 103 228 237
40 % 103 232 236
30 % 103 232 246
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10447
95 % 4 8 10900
90 % 4 8 10807
70 % 4 8 10392
50 % 4 8 9647
40 % 4 8 9207
30 % 4 8 8595
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14448
95 % 3 7 13950
90 % 3 7 13750
70 % 104 224 233
50 % 106 239 225
40 % 113 255 216
30 % 113 250 223
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13961
95 % 3 7 14155
90 % 3 7 13950
70 % 104 229 230
50 % 106 236 231
40 % 113 248 219
30 % 113 248 226
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14450
95 % 3 7 14279
90 % 33 99 654
70 % 105 236 221
50 % 105 237 229
40 % 105 237 230
30 % 105 237 238
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14449
95 % 3 7 13951
90 % 3 7 13751
70 % 3 7 12945
50 % 103 228 235
40 % 110 239 226
30 % 110 240 232
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21636
95 % 2 5 19429
90 % 2 5 19049
70 % 72 116 396
50 % 104 235 233
40 % 104 235 232
30 % 104 235 240
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14727
95 % 3 7 13967
90 % 3 7 14292
70 % 104 239 224
50 % 106 240 222
40 % 114 253 213
30 % 553 897 19
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14557
95 % 3 7 14178
90 % 3 7 13967
70 % 106 243 213
50 % 113 258 207
40 % 113 256 209
30 % 113 256 221
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21515
95 % 2 5 19462
90 % 2 5 19079
70 % 2 5 17646
50 % 101 230 240
40 % 101 230 240
30 % 101 230 250
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14394
95 % 3 7 13846
90 % 3 7 13653
70 % 104 230 229
50 % 113 183 217
40 % 113 245 220
30 % 113 245 227
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13960
95 % 3 7 14096
90 % 3 7 13891
70 % 3 7 13134
50 % 3 7 11978
40 % 3 7 11256
30 % 3 7 10375
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13709
95 % 3 7 13656
90 % 3 7 13465
70 % 3 7 12692
50 % 3 7 11569
40 % 3 5 10875
30 % 3 7 10039
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 32102
95 % 1 4 26956
90 % 1 4 26037
70 % 1 4 23663
50 % 1 4 20814
40 % 1 4 19041
30 % 1 4 17098
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27291
95 % 1 4 27599
90 % 1 4 26643
70 % 1 4 24189
50 % 1 4 21223
40 % 1 4 19407
30 % 1 4 17398
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 30488
95 % 2 4 24707
90 % 2 4 23938
70 % 2 4 21817
50 % 2 4 19253
40 % 2 4 17692
30 % 2 4 15952
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 32300
95 % 2 4 25188
90 % 2 4 26260
70 % 2 4 22183
50 % 2 4 19581
40 % 2 4 17972
30 % 2 4 17211
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 19200
95 % 3 6 17827
90 % 3 6 17463
70 % 3 6 16203
50 % 3 6 14583
40 % 3 6 13564
30 % 3 6 12377
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7132
95 % 3 6 8447
90 % 3 6 8367
70 % 3 6 8168
50 % 3 6 7670
40 % 3 6 7392
30 % 3 6 6942
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18329
95 % 3 6 16508
90 % 3 6 16207
70 % 3 6 15286
50 % 3 6 13673
40 % 3 6 12774
30 % 3 6 11692
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17099
95 % 3 6 18032
90 % 3 6 17677
70 % 99 216 242
50 % 101 225 241
40 % 108 238 229
30 % 108 238 237
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14103
95 % 3 7 14448
90 % 3 7 14238
70 % 3 7 13389
50 % 3 7 12230
40 % 15 21 3920
30 % 15 21 3825
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17724
95 % 3 6 15554
90 % 3 6 15312
70 % 3 6 14348
50 % 3 6 13051
40 % 3 6 12213
30 % 18 29 2815
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 37348
95 % 2 3 29493
90 % 2 2 28366
70 % 2 3 25672
50 % 2 3 22469
40 % 2 3 20536
30 % 2 3 18395
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 30487
95 % 2 4 24706
90 % 2 4 23937
70 % 2 4 21816
50 % 2 4 19252
40 % 2 4 17691
30 % 2 4 15951
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16822
95 % 3 6 15924
90 % 3 6 17430
70 % 3 6 16182
50 % 3 6 14566
40 % 3 6 13548
30 % 3 6 12363
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11812
95 % 3 8 13058
90 % 3 8 12895
70 % 3 8 12193
50 % 3 8 11127
40 % 3 8 10466
30 % 3 8 9675
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14104
95 % 3 7 14450
90 % 3 7 14239
70 % 3 7 13391
50 % 3 7 12232
40 % 3 7 11488
30 % 3 7 10588
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14738
95 % 3 7 14528
90 % 3 7 14318
70 % 3 7 13465
50 % 3 7 12306
40 % 17 25 3324
30 % 17 25 3280

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 13 UQ Utp17 209285
2 6RXU 13 UQ Utp17 209285
3 6RXV 13 UQ Utp17 209285
4 6RXX 50 UQ Utp17 209285
5 6RXY 13 UQ Utp17 209285
6 6RXZ 13 UQ Utp17 209285
7 5OQL 13 M Utp17 209285