6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12861
95 % 3 7 12852
90 % 3 7 12671
70 % 3 7 12057
50 % 3 11 7281
40 % 3 11 7016
30 % 3 11 6562
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13648
95 % 3 7 13292
90 % 3 7 13116
70 % 3 7 12797
50 % 3 7 11359
40 % 3 7 10679
30 % 3 7 9855
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13160
95 % 3 7 13460
90 % 3 7 13271
70 % 3 7 12597
50 % 3 7 11492
40 % 3 7 10803
30 % 3 7 9969
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13642
95 % 3 7 13280
90 % 3 7 13106
70 % 3 7 12452
50 % 3 7 11357
40 % 3 7 10662
30 % 3 9 7870
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13161
95 % 3 7 13158
90 % 3 7 12974
70 % 3 7 12337
50 % 3 7 11493
40 % 3 7 10560
30 % 3 7 9970
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12778
95 % 3 7 13218
90 % 3 7 12505
70 % 3 7 11901
50 % 3 7 10863
40 % 3 7 10208
30 % 3 11 6594
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13159
95 % 3 7 13459
90 % 3 7 13270
70 % 3 7 12596
50 % 3 7 11491
40 % 3 7 10802
30 % 3 7 9968
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12330
95 % 3 8 11681
90 % 3 8 12372
70 % 3 8 11079
50 % 3 12 7038
40 % 3 12 6802
30 % 3 12 6391
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12779
95 % 3 7 12681
90 % 3 7 12506
70 % 3 7 11902
50 % 3 7 10864
40 % 3 7 10209
30 % 3 7 9434
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5265
95 % 3 7 5836
90 % 3 7 5869
70 % 3 7 5803
50 % 3 11 3692
40 % 3 11 3668
30 % 3 11 3574
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12995
95 % 3 7 13146
90 % 3 7 13380
70 % 3 7 12706
50 % 3 11 7228
40 % 3 15 5166
30 % 3 15 4937
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13850
95 % 3 7 13647
90 % 3 7 13010
70 % 3 7 12824
50 % 3 7 11666
40 % 3 7 11006
30 % 3 7 10150
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13846
95 % 3 7 13699
90 % 3 7 13505
70 % 3 7 12813
50 % 3 7 11710
40 % 3 7 10996
30 % 3 7 10141
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5532
95 % 3 7 6310
90 % 3 7 6132
70 % 3 7 6065
50 % 12 34 1391
40 % 13 35 1372
30 % 12 34 1463
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13140
95 % 3 7 13417
90 % 3 7 13234
70 % 3 7 12558
50 % 3 7 11455
40 % 3 7 10762
30 % 3 7 9937
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13823
95 % 3 7 13656
90 % 3 7 13042
70 % 3 7 12398
50 % 3 7 11674
40 % 3 7 10613
30 % 3 7 10116
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13688
95 % 3 7 12829
90 % 3 7 12523
70 % 3 7 12538
50 % 3 7 10881
40 % 3 11 7278
30 % 3 11 6824
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10847
95 % 3 8 11965
90 % 3 8 11815
70 % 3 8 11288
50 % 3 12 6973
40 % 3 6 6747
30 % 3 12 6343
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10846
95 % 3 8 11964
90 % 3 8 12228
70 % 3 8 11641
50 % 3 11 7381
40 % 3 11 7113
30 % 3 11 6648
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12996
95 % 3 7 13147
90 % 3 7 12964
70 % 3 7 12331
50 % 3 7 11252
40 % 3 7 10557
30 % 3 7 9758
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13822
95 % 3 7 13655
90 % 3 7 12843
70 % 3 7 12835
50 % 3 7 11673
40 % 3 9 8780
30 % 3 9 7810
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5458
95 % 3 7 6195
90 % 3 7 6210
70 % 8 17 2327
50 % 8 17 2427
40 % 8 17 2438
30 % 8 17 2428
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13375
95 % 3 7 12766
90 % 3 7 13382
70 % 3 7 12708
50 % 3 7 11599
40 % 3 7 10896
30 % 3 7 10057
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 9731
95 % 3 8 9849
90 % 3 8 9761
70 % 3 11 7112
50 % 3 11 6775
40 % 3 11 6905
30 % 3 11 6468
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12755
95 % 3 7 12667
90 % 3 7 12463
70 % 3 7 11886
50 % 3 7 10824
40 % 3 7 10176
30 % 3 7 9421
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4621
95 % 3 8 5103
90 % 3 8 5168
70 % 3 8 5281
50 % 3 8 4980
40 % 3 8 5071
30 % 3 8 4680
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12754
95 % 3 7 13488
90 % 3 7 12462
70 % 3 7 12625
50 % 3 7 10849
40 % 3 7 10271
30 % 3 7 9420
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18601
95 % 3 5 17692
90 % 3 5 17378
70 % 49 89 457
50 % 56 147 351
40 % 58 154 351
30 % 58 154 366
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18247
95 % 2 5 17117
90 % 2 5 16828
70 % 56 174 261
50 % 58 184 254
40 % 58 192 258
30 % 62 197 255
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12907
95 % 3 7 12946
90 % 3 7 12766
70 % 11 96 627
50 % 60 194 231
40 % 60 194 245
30 % 60 194 259
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18282
95 % 2 5 17184
90 % 2 5 16850
70 % 10 86 705
50 % 57 175 300
40 % 57 180 292
30 % 57 180 316
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12908
95 % 3 7 12947
90 % 3 7 12767
70 % 3 7 12692
50 % 57 181 273
40 % 57 181 286
30 % 59 184 286
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19732
95 % 2 5 17545
90 % 2 5 18277
70 % 48 91 446
50 % 58 183 258
40 % 58 191 262
30 % 58 187 275
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9749
95 % 4 8 10228
90 % 4 8 10146
70 % 4 8 9832
50 % 4 8 9155
40 % 4 8 8754
30 % 4 8 8158
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12906
95 % 3 7 12938
90 % 3 7 12755
70 % 58 178 250
50 % 60 193 236
40 % 64 201 233
30 % 64 201 246
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13756
95 % 3 7 12881
90 % 3 7 12701
70 % 58 183 239
50 % 60 190 241
40 % 64 198 235
30 % 64 199 248
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12905
95 % 3 7 12937
90 % 10 76 789
70 % 60 191 211
50 % 60 192 237
40 % 60 192 250
30 % 60 192 265
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13667
95 % 3 7 13326
90 % 3 7 13150
70 % 3 7 12498
50 % 60 185 250
40 % 64 193 249
30 % 64 194 261
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20221
95 % 2 5 18399
90 % 2 5 18430
70 % 49 93 435
50 % 59 190 240
40 % 59 190 252
30 % 59 190 269
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13757
95 % 3 7 13526
90 % 3 7 13152
70 % 59 194 216
50 % 66 205 211
40 % 66 205 228
30 % 428 766 21
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13668
95 % 3 7 13327
90 % 3 7 13151
70 % 60 197 191
50 % 64 207 210
40 % 64 207 226
30 % 64 207 239
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20158
95 % 2 5 18301
90 % 2 5 17972
70 % 2 5 16743
50 % 56 187 263
40 % 56 185 277
30 % 56 185 297
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13561
95 % 3 7 13112
90 % 3 7 13233
70 % 58 184 237
50 % 64 195 229
40 % 64 196 240
30 % 64 196 254
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13079
95 % 3 7 13314
90 % 3 7 13263
70 % 3 7 12487
50 % 3 7 11392
40 % 3 7 10697
30 % 3 7 9865
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13262
95 % 3 7 12765
90 % 3 7 13381
70 % 3 7 12707
50 % 3 7 11598
40 % 3 7 10895
30 % 3 7 10056
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 30561
95 % 1 4 25719
90 % 1 4 24891
70 % 1 4 22658
50 % 1 4 19982
40 % 1 4 18308
30 % 1 4 16407
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 29708
95 % 1 4 24521
90 % 1 4 23771
70 % 1 4 21652
50 % 1 4 19143
40 % 1 4 17572
30 % 1 4 15793
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28923
95 % 2 4 23458
90 % 2 4 22793
70 % 2 4 20819
50 % 2 4 18448
40 % 2 4 16965
30 % 2 4 15277
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 25863
95 % 2 4 26319
90 % 2 4 25462
70 % 2 4 23170
50 % 2 4 20372
40 % 2 4 18640
30 % 2 4 16699
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16053
95 % 3 6 17086
90 % 3 6 16795
70 % 3 6 15698
50 % 3 6 14173
40 % 3 6 13163
30 % 3 6 12007
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6751
95 % 3 6 7410
90 % 3 6 7407
70 % 3 6 7230
50 % 3 6 6859
40 % 3 6 6259
30 % 3 6 6005
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 14307
95 % 3 6 16960
90 % 3 6 16796
70 % 3 6 15343
50 % 3 6 14095
40 % 3 6 12056
30 % 3 6 11040
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16457
95 % 3 6 15605
90 % 3 6 14194
70 % 58 176 252
50 % 60 185 248
40 % 64 195 242
30 % 64 195 258
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13411
95 % 3 7 12853
90 % 3 7 12660
70 % 3 7 12047
50 % 3 7 10999
40 % 3 9 8242
30 % 3 9 7692
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17225
95 % 3 6 14381
90 % 3 6 15323
70 % 3 6 14448
50 % 3 6 13080
40 % 3 6 12211
30 % 4 15 4987
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34457
95 % 2 3 26500
90 % 2 3 25633
70 % 2 3 23881
50 % 2 3 20499
40 % 2 3 19176
30 % 2 3 16802
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28922
95 % 2 4 23457
90 % 2 4 22792
70 % 2 4 20818
50 % 2 4 18447
40 % 2 4 16964
30 % 2 4 15276
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15814
95 % 3 6 15397
90 % 3 6 16477
70 % 3 6 15426
50 % 3 6 13932
40 % 3 6 12962
30 % 3 6 11834
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12681
95 % 3 8 12530
90 % 3 8 11819
70 % 3 8 11759
50 % 3 8 10741
40 % 3 8 10106
30 % 3 8 9347
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13448
95 % 3 7 12909
90 % 3 7 12735
70 % 3 7 12112
50 % 3 7 11049
40 % 3 7 10389
30 % 3 7 9596
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13216
95 % 3 7 12767
90 % 3 7 12594
70 % 3 7 11979
50 % 3 7 11683
40 % 3 11 7068
30 % 3 11 6611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 16 UX Utp24 209285
2 6RXU 16 UX Utp24 209285
3 6RXV 16 UX Utp24 209285
4 6RXX 11 UX Utp24 209285
5 6RXY 16 UX Utp24 209285
6 6RXZ 16 UX Utp24 209285
7 5OQL 16 P Utp24 209285
8 5JPQ 16 d Utp24 209285