6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13647
95 % 3 7 13506
90 % 3 7 13315
70 % 3 7 12634
50 % 3 11 7486
40 % 3 11 7222
30 % 3 11 6781
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13443
95 % 3 7 13169
90 % 3 7 12989
70 % 3 7 12315
50 % 3 7 11254
40 % 3 7 10571
30 % 3 7 9776
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12861
95 % 3 7 13034
90 % 3 7 12844
70 % 3 7 12204
50 % 3 7 11149
40 % 3 7 10468
30 % 3 7 9687
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13440
95 % 3 7 13161
90 % 3 7 12909
70 % 3 7 12307
50 % 3 7 11242
40 % 3 7 10560
30 % 3 9 8102
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12862
95 % 3 7 13035
90 % 3 7 12845
70 % 3 7 12205
50 % 3 7 11150
40 % 3 7 10469
30 % 3 7 9688
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13019
95 % 3 7 13327
90 % 3 7 13147
70 % 3 7 12455
50 % 3 7 11386
40 % 3 7 10713
30 % 3 11 6597
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13452
95 % 3 7 13164
90 % 3 7 12990
70 % 3 7 12316
50 % 3 7 11255
40 % 3 7 10572
30 % 3 7 9777
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12198
95 % 3 8 11617
90 % 3 8 11474
70 % 3 8 10988
50 % 3 12 7090
40 % 3 12 6851
30 % 3 12 6437
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12622
95 % 3 7 12564
90 % 3 7 12391
70 % 3 7 11795
50 % 3 7 10768
40 % 3 7 10130
30 % 3 7 9384
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5230
95 % 3 7 5847
90 % 3 7 5897
70 % 3 7 5810
50 % 3 11 3493
40 % 3 11 3477
30 % 3 11 3405
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13675
95 % 3 7 13552
90 % 3 7 13361
70 % 3 7 12676
50 % 3 11 7460
40 % 3 15 5184
30 % 3 15 4975
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13441
95 % 3 7 13162
90 % 3 7 12982
70 % 3 7 12308
50 % 3 7 11243
40 % 3 7 10561
30 % 3 7 9768
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13649
95 % 3 7 13512
90 % 3 7 13320
70 % 3 7 12638
50 % 3 7 11549
40 % 3 7 10863
30 % 3 7 10032
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5446
95 % 3 7 6253
90 % 3 7 6266
70 % 3 7 6179
50 % 12 34 1362
40 % 13 35 1349
30 % 12 34 1434
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13191
95 % 3 7 12606
90 % 3 7 12424
70 % 3 7 11830
50 % 3 7 11465
40 % 3 7 10788
30 % 3 7 9968
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13066
95 % 3 7 13432
90 % 3 7 13242
70 % 3 7 12540
50 % 3 7 11466
40 % 3 7 10789
30 % 3 7 9969
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13064
95 % 3 7 13430
90 % 3 7 13240
70 % 3 7 12538
50 % 3 7 11463
40 % 3 11 7229
30 % 3 11 6786
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12481
95 % 3 8 12337
90 % 3 8 12166
70 % 3 8 11594
50 % 3 12 7078
40 % 3 12 6842
30 % 3 12 6427
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10215
95 % 3 8 10801
90 % 3 8 10967
70 % 3 8 10301
50 % 3 11 7493
40 % 3 11 7228
30 % 3 11 6785
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13065
95 % 3 7 13431
90 % 3 7 13241
70 % 3 7 12539
50 % 3 7 11464
40 % 3 7 10787
30 % 3 7 9967
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12864
95 % 3 7 13037
90 % 3 7 12847
70 % 3 7 12207
50 % 3 7 11151
40 % 3 9 8370
30 % 3 9 7824
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5125
95 % 3 7 6155
90 % 3 7 6178
70 % 8 17 2362
50 % 8 17 2376
40 % 8 17 2439
30 % 8 17 2400
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13202
95 % 3 7 13079
90 % 3 7 12432
70 % 3 7 11838
50 % 3 7 10812
40 % 3 7 10173
30 % 3 7 9417
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 8925
95 % 3 8 9418
90 % 3 8 9305
70 % 3 11 6587
50 % 3 11 6310
40 % 3 11 6154
30 % 3 11 6049
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12865
95 % 3 7 13038
90 % 3 7 12848
70 % 3 7 12208
50 % 3 7 11152
40 % 3 7 10470
30 % 3 7 9690
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4531
95 % 3 8 5133
90 % 3 8 5187
70 % 3 8 5268
50 % 3 8 5104
40 % 3 8 4982
30 % 3 8 4798
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12615
95 % 3 7 12549
90 % 3 7 12370
70 % 3 7 11741
50 % 3 7 10750
40 % 3 7 10092
30 % 3 7 9348
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18678
95 % 3 5 18838
90 % 3 5 18440
70 % 46 86 472
50 % 51 142 352
40 % 53 149 354
30 % 53 149 367
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19497
95 % 2 5 17355
90 % 2 5 18081
70 % 50 168 265
50 % 52 178 261
40 % 52 182 268
30 % 56 191 257
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12761
95 % 3 7 13340
90 % 3 7 12675
70 % 8 93 642
50 % 54 188 234
40 % 54 188 246
30 % 54 188 263
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20117
95 % 2 5 18457
90 % 2 5 18082
70 % 7 83 717
50 % 51 169 303
40 % 51 174 305
30 % 51 174 327
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13645
95 % 3 7 13502
90 % 3 7 13313
70 % 3 7 12630
50 % 51 175 285
40 % 51 175 302
30 % 53 178 302
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20372
95 % 2 5 18839
90 % 2 5 18441
70 % 45 88 459
50 % 52 177 264
40 % 52 181 269
30 % 52 181 289
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9634
95 % 4 8 10140
90 % 4 8 10056
70 % 4 8 9738
50 % 4 8 9075
40 % 4 8 8688
30 % 4 8 8103
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13348
95 % 3 7 12924
90 % 3 7 12748
70 % 52 172 258
50 % 54 187 236
40 % 58 195 237
30 % 58 195 250
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13317
95 % 3 7 12858
90 % 3 7 13232
70 % 52 177 249
50 % 54 184 245
40 % 58 192 242
30 % 58 193 254
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12762
95 % 3 7 12849
90 % 7 73 791
70 % 54 185 226
50 % 54 186 241
40 % 54 186 252
30 % 54 186 270
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12955
95 % 3 7 13188
90 % 3 7 13015
70 % 3 7 12336
50 % 54 179 257
40 % 58 187 249
30 % 58 188 260
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19990
95 % 2 5 18241
90 % 2 5 17871
70 % 46 90 443
50 % 53 184 244
40 % 53 184 255
30 % 53 184 274
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13578
95 % 3 7 13200
90 % 3 7 13028
70 % 53 188 232
50 % 55 190 233
40 % 60 199 233
30 % 422 760 21
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13390
95 % 3 7 13021
90 % 3 7 13295
70 % 54 191 214
50 % 58 201 216
40 % 58 201 230
30 % 58 201 244
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19989
95 % 2 5 18240
90 % 2 5 17870
70 % 2 5 16651
50 % 50 179 272
40 % 50 179 283
30 % 50 179 309
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13628
95 % 3 7 13477
90 % 3 7 13294
70 % 52 178 248
50 % 58 189 232
40 % 58 190 245
30 % 58 190 256
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13522
95 % 3 7 13295
90 % 3 7 12663
70 % 3 7 12653
50 % 3 7 10977
40 % 3 7 10327
30 % 3 7 9553
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13292
95 % 3 7 12804
90 % 3 7 12634
70 % 3 7 12000
50 % 3 7 10957
40 % 3 7 10309
30 % 3 7 9530
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27875
95 % 1 4 26058
90 % 1 4 25198
70 % 1 4 22942
50 % 1 4 20191
40 % 1 4 18486
30 % 1 4 16595
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27945
95 % 1 4 25431
90 % 1 4 21671
70 % 1 4 19908
50 % 1 4 19799
40 % 1 4 18152
30 % 1 4 14467
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26930
95 % 2 4 20862
90 % 2 4 20358
70 % 2 4 18804
50 % 2 4 18257
40 % 2 4 16807
30 % 2 4 14024
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28302
95 % 2 4 23221
90 % 2 4 22522
70 % 2 4 20637
50 % 2 4 18269
40 % 2 4 16820
30 % 2 4 15145
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17933
95 % 3 6 16796
90 % 3 6 15826
70 % 3 6 15424
50 % 3 6 13918
40 % 3 6 12957
30 % 3 6 11842
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 6228
95 % 3 6 7775
90 % 3 6 7744
70 % 3 6 7548
50 % 3 6 7109
40 % 3 6 6868
30 % 3 6 6454
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15886
95 % 3 6 16906
90 % 3 6 14903
70 % 3 6 14039
50 % 3 6 13925
40 % 3 6 11900
30 % 3 6 10954
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15147
95 % 3 6 15785
90 % 3 6 15518
70 % 52 170 261
50 % 54 179 259
40 % 58 188 248
30 % 58 189 259
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13671
95 % 3 7 13545
90 % 3 7 13357
70 % 3 7 12672
50 % 3 7 11583
40 % 3 9 8170
30 % 3 9 7627
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16448
95 % 3 6 14490
90 % 3 6 14243
70 % 3 6 13483
50 % 3 6 12295
40 % 3 6 11506
30 % 3 14 5241
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34135
95 % 2 3 26232
90 % 2 3 25361
70 % 2 3 23103
50 % 2 3 20327
40 % 2 3 18601
30 % 2 3 16696
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28647
95 % 2 4 23222
90 % 2 4 23173
70 % 2 4 20638
50 % 2 4 18270
40 % 2 4 16821
30 % 2 4 15146
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17934
95 % 3 6 16797
90 % 3 6 16496
70 % 3 6 15425
50 % 3 6 13919
40 % 3 6 12958
30 % 3 6 11843
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11519
95 % 3 8 10807
90 % 3 8 11417
70 % 3 8 10935
50 % 3 8 9540
40 % 3 8 9111
30 % 3 8 8838
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13072
95 % 3 7 13440
90 % 3 7 13251
70 % 3 7 12551
50 % 3 7 11475
40 % 3 7 10798
30 % 3 7 9975
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13071
95 % 3 7 13439
90 % 3 7 13250
70 % 3 7 12550
50 % 3 7 11474
40 % 3 11 7036
30 % 3 11 6598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 17 UZ Utp30 209285
2 6RXU 17 UZ Utp30 209285
3 6RXV 17 UZ Utp30 209285
4 6RXY 17 UZ Utp30 209285
5 6RXZ 17 UZ Utp30 209285
6 5OQL 17 Q Utp30 209285
7 5JPQ 20 k Utp30 209285