6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14662
95 % 3 7 14190
90 % 3 7 14262
70 % 3 7 13413
50 % 11 19 4536
40 % 11 19 4452
30 % 11 19 4354
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13605
95 % 3 7 13584
90 % 3 7 13399
70 % 3 7 12628
50 % 3 7 11511
40 % 3 7 10808
30 % 3 7 9974
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14103
95 % 3 7 13374
90 % 3 7 13408
70 % 3 7 12637
50 % 3 7 11347
40 % 3 7 10812
30 % 3 7 9978
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14102
95 % 3 7 13592
90 % 3 7 13195
70 % 3 7 12438
50 % 3 7 11346
40 % 3 7 10639
30 % 11 17 4793
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14667
95 % 3 7 14483
90 % 3 7 14270
70 % 3 7 13421
50 % 3 7 12266
40 % 3 7 11498
30 % 3 7 10578
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13935
95 % 3 7 14236
90 % 3 7 14043
70 % 3 7 13196
50 % 3 7 12029
40 % 3 7 11295
30 % 11 19 4197
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14101
95 % 3 7 13373
90 % 3 7 13194
70 % 3 7 12437
50 % 3 7 11345
40 % 3 7 10638
30 % 3 7 9834
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13041
95 % 3 8 12331
90 % 3 8 12209
70 % 3 8 11595
50 % 11 20 4297
40 % 11 20 4222
30 % 11 20 4134
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13936
95 % 3 7 14237
90 % 3 7 14044
70 % 3 7 13197
50 % 3 7 12030
40 % 3 7 11296
30 % 3 7 10411
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5430
95 % 3 7 6428
90 % 3 7 6473
70 % 3 7 6396
50 % 11 19 2115
40 % 11 19 2136
30 % 11 19 2169
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14104
95 % 3 7 13375
90 % 3 7 13196
70 % 3 7 12638
50 % 11 19 4508
40 % 19 31 2660
30 % 19 31 2648
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13995
95 % 3 7 14351
90 % 3 7 14142
70 % 3 7 13305
50 % 3 7 12142
40 % 3 7 11389
30 % 3 7 10494
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13917
95 % 3 7 13646
90 % 3 7 13470
70 % 3 7 13157
50 % 3 7 11990
40 % 3 7 11261
30 % 3 7 10387
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5530
95 % 3 7 6645
90 % 3 7 6671
70 % 3 7 6591
50 % 20 42 1111
40 % 21 43 1097
30 % 20 42 1187
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13916
95 % 3 7 14188
90 % 3 7 13996
70 % 3 7 13156
50 % 3 7 11989
40 % 3 7 11260
30 % 3 7 10386
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14485
95 % 3 7 14146
90 % 3 7 13959
70 % 3 7 13126
50 % 3 7 11954
40 % 3 7 11228
30 % 3 7 10361
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13637
95 % 3 7 14189
90 % 3 7 13997
70 % 3 7 12697
50 % 3 7 11991
40 % 11 19 4449
30 % 11 19 4353
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10470
95 % 3 8 11747
90 % 3 8 12500
70 % 3 8 11113
50 % 11 20 4217
40 % 11 20 4146
30 % 11 20 4060
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12974
95 % 3 8 11026
90 % 3 8 12404
70 % 3 8 11761
50 % 11 19 4532
40 % 11 19 4448
30 % 11 19 4352
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13759
95 % 3 7 14359
90 % 3 7 13711
70 % 3 7 12909
50 % 3 7 12150
40 % 3 7 11048
30 % 3 7 10198
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14636
95 % 3 7 13989
90 % 3 7 14220
70 % 3 7 12795
50 % 3 7 12230
40 % 11 17 4882
30 % 11 17 4876
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5862
95 % 3 7 6684
90 % 3 7 6508
70 % 16 25 1646
50 % 16 25 1680
40 % 16 25 1697
30 % 16 25 1740
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14231
95 % 3 7 13413
90 % 3 7 13823
70 % 3 7 12695
50 % 3 7 11568
40 % 3 7 10671
30 % 11 16 5150
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 9498
95 % 3 8 10072
90 % 3 8 10565
70 % 7 15 5485
50 % 7 15 5498
40 % 7 15 5349
30 % 7 15 5165
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13676
95 % 3 7 13736
90 % 3 7 13206
70 % 3 7 12777
50 % 3 7 11352
40 % 3 7 10646
30 % 3 7 9841
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4893
95 % 3 8 5487
90 % 3 8 5354
70 % 3 8 5548
50 % 9 14 2989
40 % 9 14 2977
30 % 9 14 2964
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14151
95 % 3 7 13336
90 % 3 7 13290
70 % 3 7 12519
50 % 3 7 11434
40 % 3 7 10637
30 % 3 7 9909
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 19723
95 % 3 5 18745
90 % 3 5 18355
70 % 62 102 445
50 % 64 108 459
40 % 92 188 311
30 % 92 188 321
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19298
95 % 2 5 18135
90 % 2 5 17776
70 % 92 210 242
50 % 94 220 239
40 % 94 220 241
30 % 101 231 241
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13482
95 % 3 7 13335
90 % 3 7 13151
70 % 32 117 536
50 % 96 230 227
40 % 96 230 231
30 % 96 230 242
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21715
95 % 2 5 19984
90 % 2 5 19545
70 % 31 107 583
50 % 93 211 261
40 % 93 216 259
30 % 93 216 271
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13675
95 % 3 7 13735
90 % 3 7 13551
70 % 3 7 12776
50 % 93 217 250
40 % 93 217 252
30 % 95 220 254
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19988
95 % 2 5 19985
90 % 2 5 18676
70 % 63 106 433
50 % 94 219 244
40 % 94 223 239
30 % 94 223 253
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10168
95 % 4 8 10492
90 % 4 8 10435
70 % 4 8 10068
50 % 4 8 9370
40 % 4 8 8942
30 % 4 8 8311
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13648
95 % 3 7 13681
90 % 3 7 13503
70 % 94 214 240
50 % 96 229 229
40 % 103 240 220
30 % 103 240 227
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14340
95 % 3 7 13879
90 % 3 7 13677
70 % 94 219 236
50 % 96 226 233
40 % 103 238 224
30 % 103 238 230
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14455
95 % 3 7 14091
90 % 32 98 655
70 % 96 227 225
50 % 96 228 230
40 % 96 228 232
30 % 96 228 244
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14191
95 % 3 7 13559
90 % 3 7 13259
70 % 3 7 12606
50 % 94 219 241
40 % 94 219 243
30 % 101 231 240
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21341
95 % 2 5 19345
90 % 2 5 18955
70 % 64 108 420
50 % 95 226 232
40 % 95 226 235
30 % 95 226 246
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13624
95 % 3 7 14092
90 % 3 7 14103
70 % 94 229 227
50 % 96 231 228
40 % 104 243 215
30 % 541 881 22
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14512
95 % 3 7 13837
90 % 3 7 14005
70 % 96 233 218
50 % 103 246 211
40 % 103 246 214
30 % 103 246 223
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21287
95 % 2 5 19248
90 % 2 5 18861
70 % 63 108 428
50 % 92 221 246
40 % 92 221 246
30 % 92 221 259
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14456
95 % 3 7 14302
90 % 3 7 13452
70 % 94 220 233
50 % 103 234 223
40 % 103 235 226
30 % 103 235 232
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13856
95 % 3 7 14219
90 % 3 7 14026
70 % 3 7 13061
50 % 3 7 11898
40 % 3 7 11169
30 % 3 7 10305
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14134
95 % 3 7 13437
90 % 3 7 13256
70 % 3 7 12490
50 % 3 7 11404
40 % 3 7 10695
30 % 3 7 9884
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27100
95 % 1 4 27424
90 % 1 4 26484
70 % 1 4 24078
50 % 1 4 21148
40 % 1 4 19316
30 % 1 4 17305
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27102
95 % 1 4 27425
90 % 1 4 22834
70 % 1 4 23894
50 % 1 4 20990
40 % 1 4 17034
30 % 1 4 17207
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 30264
95 % 2 4 24509
90 % 2 4 23761
70 % 2 4 21737
50 % 2 4 19192
40 % 2 4 17588
30 % 2 4 15878
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 27099
95 % 2 4 27423
90 % 2 4 26483
70 % 2 4 24077
50 % 2 4 21147
40 % 2 4 19315
30 % 2 4 17304
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17001
95 % 3 6 18045
90 % 3 6 17693
70 % 3 6 16383
50 % 3 6 14773
40 % 3 6 13698
30 % 3 6 12477
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7724
95 % 3 6 8358
90 % 3 6 8285
70 % 3 6 8072
50 % 3 6 7585
40 % 3 6 7335
30 % 3 6 6874
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18203
95 % 3 6 16441
90 % 3 6 15734
70 % 3 6 15209
50 % 3 6 13647
40 % 3 6 12731
30 % 3 6 11634
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18684
95 % 3 6 17175
90 % 3 6 16839
70 % 89 207 244
50 % 91 216 245
40 % 98 228 233
30 % 98 229 243
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14661
95 % 3 7 14474
90 % 3 7 14261
70 % 3 7 13159
50 % 3 7 12260
40 % 11 17 4956
30 % 11 17 4811
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17000
95 % 3 6 16172
90 % 3 6 15885
70 % 3 6 14838
50 % 3 6 13471
40 % 3 6 12549
30 % 11 22 3657
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 37171
95 % 2 3 29333
90 % 2 3 28261
70 % 2 3 25551
50 % 2 3 22391
40 % 2 3 20441
30 % 2 3 18308
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 26555
95 % 2 4 26717
90 % 2 4 25863
70 % 2 4 23511
50 % 2 4 20693
40 % 2 4 18926
30 % 2 4 16987
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18204
95 % 3 6 16646
90 % 3 6 16136
70 % 3 6 15211
50 % 3 6 13648
40 % 3 6 12732
30 % 3 6 11635
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12817
95 % 3 8 12172
90 % 3 8 12180
70 % 3 8 12124
50 % 3 8 10558
40 % 3 8 10051
30 % 3 8 9246
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14633
95 % 3 7 14430
90 % 3 7 14217
70 % 3 7 13381
50 % 3 7 12223
40 % 3 7 11462
30 % 3 7 10547
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14230
95 % 3 7 14182
90 % 3 7 13467
70 % 3 7 12693
50 % 3 7 11850
40 % 11 19 4332
30 % 11 19 4246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXU 47 Co 40S ribosomal protein S24 209285
2 6RXV 47 Co 40S ribosomal protein S24 209285
3 6RXX 42 Co 40S ribosomal protein S24 209285
4 6RXZ 46 Co 40S ribosomal protein S24 209285
5 5OQL 47 y 40S ribosomal protein S24 209285