6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14484
95 % 3 7 13737
90 % 3 7 13550
70 % 3 7 12771
50 % 17 25 3367
40 % 17 25 3350
30 % 17 25 3308
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13938
95 % 3 7 13860
90 % 3 7 13678
70 % 3 7 12886
50 % 3 7 11725
40 % 3 7 11020
30 % 3 7 10147
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13851
95 % 3 7 13715
90 % 3 7 13973
70 % 3 7 12978
50 % 3 7 11957
40 % 3 7 11100
30 % 3 7 10344
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14543
95 % 3 7 13686
90 % 3 7 13651
70 % 3 7 12863
50 % 3 7 11702
40 % 3 7 10996
30 % 16 22 3812
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14804
95 % 3 7 14355
90 % 3 7 14155
70 % 3 7 13310
50 % 3 7 12115
40 % 3 7 11383
30 % 3 7 10471
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14456
95 % 3 7 13672
90 % 3 7 13489
70 % 3 7 12721
50 % 3 7 11582
40 % 3 7 10870
30 % 16 24 3504
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14805
95 % 3 7 14356
90 % 3 7 14156
70 % 3 7 13311
50 % 3 7 12116
40 % 3 7 11384
30 % 3 7 10472
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13378
95 % 3 8 12598
90 % 3 8 12474
70 % 3 8 11848
50 % 17 26 3212
40 % 17 26 3255
30 % 17 26 3221
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14284
95 % 3 7 14548
90 % 3 7 14347
70 % 3 7 13468
50 % 3 7 12265
40 % 3 7 11524
30 % 3 7 10602
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5667
95 % 3 7 6669
90 % 3 7 6682
70 % 3 7 6576
50 % 16 24 1680
40 % 16 24 1718
30 % 16 24 1745
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13850
95 % 3 7 13968
90 % 3 7 13777
70 % 3 7 13140
50 % 16 24 3699
40 % 29 41 2051
30 % 29 41 2078
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 15047
95 % 3 7 14806
90 % 3 7 14593
70 % 3 7 13695
50 % 3 7 12480
40 % 3 7 11715
30 % 3 7 10768
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13980
95 % 3 7 13922
90 % 3 7 14645
70 % 3 7 12938
50 % 3 7 11882
40 % 3 7 11177
30 % 3 7 10285
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5742
95 % 3 7 6804
90 % 3 7 6810
70 % 3 7 6696
50 % 25 47 971
40 % 26 48 970
30 % 25 47 1042
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14350
95 % 3 7 14678
90 % 3 7 14474
70 % 3 7 13577
50 % 3 7 12373
40 % 3 7 11615
30 % 3 7 10680
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14900
95 % 3 7 14536
90 % 3 7 14337
70 % 3 7 13451
50 % 3 7 12250
40 % 3 7 11512
30 % 3 7 10591
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13982
95 % 3 7 14497
90 % 3 7 13743
70 % 3 7 13424
50 % 3 7 12220
40 % 18 26 3328
30 % 18 26 3291
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11286
95 % 3 8 12064
90 % 3 8 11929
70 % 3 8 11384
50 % 17 26 3346
40 % 17 26 3321
30 % 17 26 3285
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12012
95 % 3 8 13239
90 % 3 8 13078
70 % 3 8 12344
50 % 18 26 3332
40 % 18 26 3307
30 % 18 26 3224
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14858
95 % 3 7 13840
90 % 3 7 14262
70 % 3 7 13397
50 % 3 7 12194
40 % 3 7 11465
30 % 3 7 10546
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14349
95 % 3 7 14684
90 % 3 7 13543
70 % 3 7 12765
50 % 3 7 11624
40 % 15 21 4187
30 % 15 21 4087
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 6099
95 % 3 7 6914
90 % 3 7 6912
70 % 23 32 1272
50 % 23 32 1313
40 % 23 32 1348
30 % 23 32 1382
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 15048
95 % 3 7 14807
90 % 3 7 14594
70 % 3 7 13696
50 % 3 7 12481
40 % 3 7 11716
30 % 18 23 3631
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10286
95 % 3 8 10444
90 % 3 8 10424
70 % 10 18 4798
50 % 10 18 4574
40 % 10 18 4496
30 % 10 18 4389
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13999
95 % 3 7 13975
90 % 3 7 13784
70 % 3 7 12984
50 % 3 7 11803
40 % 3 7 11106
30 % 3 7 10220
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4763
95 % 3 8 5565
90 % 3 8 5600
70 % 3 8 5838
50 % 11 16 2676
40 % 11 16 2679
30 % 11 16 2666
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14570
95 % 3 7 13881
90 % 3 7 13695
70 % 3 7 12898
50 % 3 7 11735
40 % 3 7 11029
30 % 3 7 10157
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 20194
95 % 3 5 19107
90 % 3 5 18705
70 % 73 113 424
50 % 105 196 298
40 % 107 203 288
30 % 107 203 302
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21510
95 % 2 5 19158
90 % 2 5 19610
70 % 108 225 237
50 % 109 238 239
40 % 112 242 232
30 % 119 254 233
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14028
95 % 3 7 14035
90 % 3 7 13841
70 % 38 123 526
50 % 114 248 223
40 % 114 248 227
30 % 114 248 236
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21388
95 % 2 5 19128
90 % 2 5 18732
70 % 2 5 17151
50 % 109 226 252
40 % 109 230 252
30 % 109 230 259
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14000
95 % 3 7 13976
90 % 3 7 14360
70 % 3 7 12985
50 % 110 234 243
40 % 110 234 247
30 % 112 237 248
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20640
95 % 2 5 19842
90 % 2 5 18132
70 % 74 117 410
50 % 110 235 238
40 % 110 239 238
30 % 110 239 245
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10630
95 % 4 8 11045
90 % 4 8 10958
70 % 4 8 10206
50 % 4 8 9484
40 % 4 8 9324
30 % 4 8 8431
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14830
95 % 3 7 14397
90 % 3 7 14205
70 % 111 231 231
50 % 114 247 224
40 % 121 258 219
30 % 121 258 230
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14652
95 % 3 7 14072
90 % 3 7 13869
70 % 112 237 226
50 % 114 244 226
40 % 122 257 221
30 % 122 257 231
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14882
95 % 3 7 14505
90 % 36 102 647
70 % 112 243 217
50 % 112 244 227
40 % 112 244 230
30 % 112 244 238
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14829
95 % 3 7 14396
90 % 3 7 14204
70 % 3 7 13349
50 % 112 237 235
40 % 119 248 228
30 % 119 249 235
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20177
95 % 2 5 19385
90 % 2 5 18962
70 % 75 119 391
50 % 112 243 228
40 % 112 243 231
30 % 112 243 240
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14832
95 % 3 7 14399
90 % 3 7 14207
70 % 112 247 218
50 % 115 251 220
40 % 116 252 224
30 % 583 927 21
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14831
95 % 3 7 14398
90 % 3 7 14206
70 % 114 251 213
50 % 122 265 202
40 % 122 265 208
30 % 122 265 221
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20618
95 % 2 5 19804
90 % 2 5 19355
70 % 2 5 17900
50 % 109 238 241
40 % 109 238 243
30 % 109 238 252
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14833
95 % 3 7 14400
90 % 3 7 14208
70 % 111 237 227
50 % 120 251 218
40 % 120 252 222
30 % 121 253 232
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14707
95 % 3 7 14495
90 % 3 7 13970
70 % 3 7 13368
50 % 3 7 11955
40 % 3 7 11485
30 % 3 7 10340
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 15016
95 % 3 7 14831
90 % 3 7 14618
70 % 3 7 13653
50 % 3 7 12443
40 % 3 7 11680
30 % 3 7 10733
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 32723
95 % 1 4 27456
90 % 1 4 26510
70 % 1 4 21424
50 % 1 4 21190
40 % 1 4 17459
30 % 1 4 17383
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27845
95 % 1 4 28113
90 % 1 4 27124
70 % 1 4 21359
50 % 1 4 21446
40 % 1 4 17416
30 % 1 4 17589
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 32929
95 % 2 4 27723
90 % 2 4 24807
70 % 2 4 22569
50 % 2 4 19943
40 % 2 4 19545
30 % 2 4 15067
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 27843
95 % 2 4 28112
90 % 2 4 27123
70 % 2 4 24603
50 % 2 4 21597
40 % 2 4 19760
30 % 2 4 17688
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18823
95 % 3 6 15815
90 % 3 6 16739
70 % 3 6 15537
50 % 3 6 13239
40 % 3 6 13091
30 % 3 6 11328
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7986
95 % 3 6 8604
90 % 3 6 8558
70 % 3 6 7423
50 % 3 6 7783
40 % 3 6 7497
30 % 3 6 6986
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17445
95 % 3 6 18358
90 % 3 6 18104
70 % 3 6 16719
50 % 3 6 15041
40 % 3 6 13969
30 % 3 6 11667
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18732
95 % 3 6 16942
90 % 3 6 16598
70 % 107 224 236
50 % 109 233 240
40 % 117 247 229
30 % 117 247 237
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 15046
95 % 3 7 14498
90 % 3 7 14305
70 % 3 7 13694
50 % 3 7 12479
40 % 15 21 4025
30 % 15 21 3921
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 19694
95 % 3 6 18351
90 % 3 6 17982
70 % 3 6 16614
50 % 3 6 14940
40 % 3 6 13885
30 % 18 29 2918
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 36875
95 % 2 3 28308
90 % 2 3 27924
70 % 2 3 24754
50 % 2 3 21734
40 % 2 3 19873
30 % 2 3 17795
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 29823
95 % 2 4 23385
90 % 2 4 22751
70 % 2 4 20810
50 % 2 4 18502
40 % 2 4 17026
30 % 2 4 15382
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18294
95 % 3 6 16230
90 % 3 6 15316
70 % 3 6 14874
50 % 3 6 13493
40 % 3 6 12580
30 % 3 6 11518
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13749
95 % 3 8 13519
90 % 3 8 13334
70 % 3 8 12589
50 % 3 8 11463
40 % 3 8 10776
30 % 3 8 9932
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14353
95 % 3 7 14685
90 % 3 7 14479
70 % 3 7 13586
50 % 3 7 12378
40 % 3 7 11621
30 % 3 7 10684
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14485
95 % 3 7 13782
90 % 3 7 14053
70 % 3 7 12807
50 % 3 7 12024
40 % 17 25 3386
30 % 17 25 3336

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXU 60 CZ Bfr2 209285
2 6RXV 62 CZ Bfr2 209285
3 6RXX 45 CZ Bfr2 209285
4 6RXZ 61 CZ Bfr2 209285