6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13207
95 % 3 7 13555
90 % 3 7 13384
70 % 3 7 12682
50 % 3 11 7514
40 % 3 11 7235
30 % 3 11 6796
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13150
95 % 3 7 13448
90 % 3 7 13278
70 % 3 7 12585
50 % 3 7 11494
40 % 3 7 10804
30 % 3 7 9964
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13536
95 % 3 7 13113
90 % 3 7 13015
70 % 3 7 12280
50 % 3 7 11057
40 % 3 7 10194
30 % 3 7 9610
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12983
95 % 3 7 13149
90 % 3 7 12962
70 % 3 7 12307
50 % 3 7 11233
40 % 3 7 10547
30 % 3 9 7867
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13306
95 % 3 7 12851
90 % 3 7 13533
70 % 3 7 11889
50 % 3 7 10834
40 % 3 7 10184
30 % 3 7 9426
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12870
95 % 3 7 13294
90 % 3 7 13108
70 % 3 7 12439
50 % 3 7 11350
40 % 3 7 10669
30 % 3 11 6608
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12765
95 % 3 7 12666
90 % 3 7 12493
70 % 3 7 11904
50 % 3 7 10847
40 % 3 7 10195
30 % 3 7 9436
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12345
95 % 3 8 11721
90 % 3 8 11591
70 % 3 8 11078
50 % 3 12 7008
40 % 3 12 6768
30 % 3 12 6369
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13074
95 % 3 7 13312
90 % 3 7 13126
70 % 3 7 12454
50 % 3 7 11365
40 % 3 7 10677
30 % 3 7 9852
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5522
95 % 3 7 6325
90 % 3 7 6341
70 % 3 7 6262
50 % 3 11 3534
40 % 3 11 3520
30 % 3 11 3441
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13206
95 % 3 7 13148
90 % 3 7 12961
70 % 3 7 12306
50 % 3 11 7212
40 % 3 14 5446
30 % 3 14 5203
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13828
95 % 3 7 13670
90 % 3 7 13495
70 % 3 7 12793
50 % 3 7 11685
40 % 3 7 10980
30 % 3 7 10136
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13831
95 % 3 7 13681
90 % 3 7 13502
70 % 3 7 12799
50 % 3 7 11692
40 % 3 7 10987
30 % 3 7 10142
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5505
95 % 3 7 6303
90 % 3 7 6315
70 % 3 7 6244
50 % 12 34 1379
40 % 13 35 1362
30 % 12 34 1456
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13662
95 % 3 7 12773
90 % 3 7 13181
70 % 3 7 12379
50 % 3 7 11407
40 % 3 7 10614
30 % 3 7 9798
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13702
95 % 3 7 13073
90 % 3 7 13263
70 % 3 7 12572
50 % 3 7 11479
40 % 3 7 10793
30 % 3 7 9955
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13202
95 % 3 7 13545
90 % 3 7 13378
70 % 3 7 12676
50 % 3 7 11586
40 % 3 11 7266
30 % 3 11 6823
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11058
95 % 3 8 10671
90 % 3 8 10586
70 % 3 8 11540
50 % 3 12 7052
40 % 3 12 6826
30 % 3 12 6406
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 11081
95 % 3 8 10451
90 % 3 8 12137
70 % 3 8 11572
50 % 3 11 7542
40 % 3 11 7263
30 % 3 11 6819
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13133
95 % 3 7 13418
90 % 3 7 13241
70 % 3 7 12543
50 % 3 7 11452
40 % 3 7 10766
30 % 3 7 9935
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13594
95 % 3 7 13235
90 % 3 7 13043
70 % 3 7 12380
50 % 3 7 11299
40 % 3 9 8483
30 % 3 9 7930
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5396
95 % 3 7 6095
90 % 3 7 6124
70 % 8 17 2374
50 % 8 17 2404
40 % 8 17 2425
30 % 8 17 2453
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12841
95 % 3 7 12843
90 % 3 7 12657
70 % 3 7 11875
50 % 3 7 10983
40 % 3 7 10324
30 % 3 7 9543
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 9545
95 % 3 8 10194
90 % 3 8 10117
70 % 3 11 7211
50 % 3 11 7115
40 % 3 11 6873
30 % 3 11 6459
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13408
95 % 3 7 13425
90 % 3 7 12693
70 % 3 7 12144
50 % 3 7 11003
40 % 3 7 10336
30 % 3 7 9558
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4192
95 % 3 8 5126
90 % 3 8 5194
70 % 3 8 5144
50 % 3 8 4995
40 % 3 8 4867
30 % 3 8 4697
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12738
95 % 3 7 12653
90 % 3 7 12567
70 % 3 7 11855
50 % 3 7 10808
40 % 3 7 10255
30 % 3 7 9490
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 18549
95 % 3 5 17671
90 % 3 5 17358
70 % 49 89 456
50 % 54 145 354
40 % 56 152 349
30 % 56 152 364
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20343
95 % 2 5 18610
90 % 2 5 18278
70 % 53 171 266
50 % 55 181 258
40 % 55 185 263
30 % 59 194 258
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13809
95 % 3 7 13623
90 % 3 7 13454
70 % 8 93 647
50 % 57 191 236
40 % 57 191 247
30 % 57 191 262
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20342
95 % 2 5 18609
90 % 2 5 18277
70 % 7 83 736
50 % 54 172 301
40 % 54 177 297
30 % 54 177 323
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13811
95 % 3 7 13625
90 % 3 7 13456
70 % 3 7 12755
50 % 54 178 277
40 % 54 178 290
30 % 56 181 291
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 19805
95 % 2 5 17518
90 % 2 5 17376
70 % 48 91 447
50 % 55 180 260
40 % 55 184 267
30 % 55 184 282
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 9271
95 % 4 8 10154
90 % 4 8 10075
70 % 4 8 9758
50 % 4 8 9092
40 % 4 8 8684
30 % 4 8 8109
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13648
95 % 3 7 13332
90 % 3 7 13150
70 % 55 175 253
50 % 57 190 239
40 % 61 198 233
30 % 61 198 249
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13454
95 % 3 7 12958
90 % 3 7 12777
70 % 55 180 247
50 % 57 187 243
40 % 61 195 238
30 % 61 196 254
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12833
95 % 3 7 13016
90 % 7 73 809
70 % 57 188 220
50 % 57 189 240
40 % 57 189 252
30 % 57 189 267
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13386
95 % 3 7 12821
90 % 3 7 12539
70 % 3 7 12033
50 % 57 182 253
40 % 61 190 249
30 % 61 191 263
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20207
95 % 2 5 18365
90 % 2 5 18047
70 % 49 93 435
50 % 56 187 242
40 % 56 187 255
30 % 56 187 269
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13796
95 % 3 7 13063
90 % 3 7 13438
70 % 56 191 223
50 % 63 202 215
40 % 63 202 229
30 % 425 763 22
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13081
95 % 3 7 13319
90 % 3 7 13138
70 % 57 194 197
50 % 61 204 211
40 % 61 204 227
30 % 61 204 244
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 18989
95 % 2 5 18419
90 % 2 5 18102
70 % 48 93 438
50 % 53 182 268
40 % 53 182 279
30 % 53 182 304
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13649
95 % 3 7 13333
90 % 3 7 13342
70 % 55 181 244
50 % 61 192 233
40 % 61 193 242
30 % 61 193 257
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13387
95 % 3 7 12822
90 % 3 7 12640
70 % 3 7 12034
50 % 3 7 10972
40 % 3 7 10315
30 % 3 7 9537
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13242
95 % 3 7 13554
90 % 3 7 13257
70 % 3 7 12681
50 % 3 7 11592
40 % 3 7 10891
30 % 3 7 10047
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 30533
95 % 1 4 25672
90 % 1 4 24842
70 % 1 4 22653
50 % 1 4 19953
40 % 1 4 18274
30 % 1 4 16400
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 25820
95 % 1 4 26295
90 % 1 4 25215
70 % 1 4 22969
50 % 1 4 20357
40 % 1 4 18500
30 % 1 4 16591
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 28887
95 % 2 4 23406
90 % 2 4 22733
70 % 2 4 20806
50 % 2 4 18421
40 % 2 4 16926
30 % 2 4 15269
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24042
95 % 2 4 25917
90 % 2 4 25086
70 % 2 4 22858
50 % 2 4 18738
40 % 2 4 18417
30 % 2 4 15507
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16064
95 % 3 6 17074
90 % 3 6 16775
70 % 3 6 15684
50 % 3 6 14155
40 % 3 6 13153
30 % 3 6 12005
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7234
95 % 3 6 7825
90 % 3 6 7797
70 % 3 6 7603
50 % 3 6 7151
40 % 3 6 6904
30 % 3 6 6481
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17319
95 % 3 6 15703
90 % 3 6 14423
70 % 3 6 13894
50 % 3 6 12621
40 % 3 6 11790
30 % 3 6 11255
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16063
95 % 3 6 17073
90 % 3 6 16774
70 % 55 173 260
50 % 57 182 255
40 % 61 192 246
30 % 61 192 261
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13827
95 % 3 7 13669
90 % 3 7 13494
70 % 3 7 12792
50 % 3 7 11684
40 % 3 9 8738
30 % 3 9 7626
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16062
95 % 3 6 16941
90 % 3 6 16773
70 % 3 6 15581
50 % 3 6 14154
40 % 3 6 13152
30 % 4 15 5117
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 34424
95 % 2 3 26463
90 % 2 3 26181
70 % 2 3 23305
50 % 2 3 20485
40 % 2 3 19149
30 % 2 3 17174
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 27677
95 % 2 4 21729
90 % 2 4 21200
70 % 2 4 19514
50 % 2 4 17379
40 % 2 4 16019
30 % 2 4 14492
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 16132
95 % 3 6 13801
90 % 3 6 13621
70 % 3 6 12907
50 % 3 6 11792
40 % 3 6 11076
30 % 3 6 10218
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10579
95 % 3 8 11552
90 % 3 8 11428
70 % 3 8 10929
50 % 3 8 10065
40 % 3 8 9565
30 % 3 8 8858
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13428
95 % 3 7 12909
90 % 3 7 12729
70 % 3 7 12101
50 % 3 7 11038
40 % 3 7 10373
30 % 3 7 9592
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12842
95 % 3 7 13170
90 % 3 7 12658
70 % 3 7 12043
50 % 3 7 10984
40 % 3 11 7038
30 % 3 11 6609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 9 UL Utp12 209285
2 6RXU 9 UL Utp12 209285
3 6RXV 9 UL Utp12 209285
4 6RXX 6 UL Utp12 209285
5 6RXY 9 UL Utp12 209285
6 6RXZ 9 UL Utp12 209285
7 5OQL 9 I Utp12 209285