6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Sequence Similarity Clusters for the Entities in PDB 6RXV

Entity #1 | Chains: UA
Periodic tryptophan protein 2-like protein protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14344
95 % 3 7 13597
90 % 3 7 13416
70 % 3 7 12663
50 % 17 25 3348
40 % 17 25 3318
30 % 17 25 3289
Entity #10 | Chains: UM
Utp13 protein, length: 912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13705
95 % 3 7 13552
90 % 3 7 13370
70 % 3 7 12621
50 % 3 7 11489
40 % 3 7 10781
30 % 3 7 9956
Entity #11 | Chains: UN
Utp14 protein, length: 938 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13706
95 % 3 7 14117
90 % 3 7 13371
70 % 3 7 12622
50 % 3 7 11727
40 % 3 7 10998
30 % 3 7 10143
Entity #12 | Chains: UO
Utp15 protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13707
95 % 3 7 13553
90 % 3 7 13372
70 % 3 7 12861
50 % 3 7 11728
40 % 3 7 10782
30 % 16 22 3700
Entity #13 | Chains: UQ
Utp17 protein, length: 960 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14752
95 % 3 7 14430
90 % 3 7 14209
70 % 3 7 13601
50 % 3 7 12398
40 % 3 7 11640
30 % 3 7 10527
Entity #14 | Chains: UR
Utp18 protein, length: 618 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14312
95 % 3 7 13737
90 % 3 7 13342
70 % 3 7 12594
50 % 3 7 11461
40 % 3 7 10924
30 % 16 24 3441
Entity #15 | Chains: UU
Utp21 protein, length: 1049 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13973
95 % 3 7 14068
90 % 3 7 13850
70 % 3 7 13054
50 % 3 7 11910
40 % 3 7 11165
30 % 3 7 10289
Entity #16 | Chains: UX
Utp24 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13273
95 % 3 8 12510
90 % 3 8 12380
70 % 3 8 11762
50 % 17 26 3203
40 % 17 26 3193
30 % 17 26 3153
Entity #17 | Chains: UZ
Utp30 protein, length: 391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14072
95 % 3 7 14236
90 % 3 7 14027
70 % 3 7 13209
50 % 3 7 12041
40 % 3 7 11300
30 % 3 7 10407
Entity #18 | Chains: CA,CB
Nop1 protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5547
95 % 3 7 6328
90 % 3 7 6343
70 % 3 7 6278
50 % 16 24 1671
40 % 16 24 1701
30 % 16 24 1740
Entity #19 | Chains: CC
Nop56 protein, length: 523 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14882
95 % 3 7 14659
90 % 3 7 14449
70 % 3 7 13600
50 % 16 24 3537
40 % 29 40 2052
30 % 29 40 2123
Entity #2 | Chains: UB
Utp2 protein, length: 907 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14595
95 % 3 7 14607
90 % 3 7 13893
70 % 3 7 13090
50 % 3 7 12406
40 % 3 7 11193
30 % 3 7 10664
Entity #20 | Chains: CD
Nop58 protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14141
95 % 3 7 13810
90 % 3 7 14155
70 % 3 7 13310
50 % 3 7 12125
40 % 3 7 11382
30 % 3 7 10487
Entity #21 | Chains: CE,CF
Snu13 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5573
95 % 3 7 6516
90 % 3 7 6544
70 % 3 7 6452
50 % 25 47 959
40 % 26 48 963
30 % 25 47 1026
Entity #22 | Chains: CG
Rrp9 protein, length: 630 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14348
95 % 3 7 14655
90 % 3 7 13419
70 % 3 7 13464
50 % 3 7 11530
40 % 3 7 10819
30 % 3 7 9990
Entity #23 | Chains: CH
RNA 3'-terminal phosphate cyclase-like protein protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14859
95 % 3 7 14612
90 % 3 7 14399
70 % 3 7 13119
50 % 3 7 12354
40 % 3 7 11217
30 % 3 7 10666
Entity #24 | Chains: CI
Bms1 protein, length: 1163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14708
95 % 3 7 14321
90 % 3 7 13390
70 % 3 7 12765
50 % 3 7 11502
40 % 18 26 3302
30 % 18 26 3272
Entity #25 | Chains: CJ
Imp3 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10649
95 % 3 8 12812
90 % 3 8 12670
70 % 3 8 12001
50 % 17 26 3299
40 % 17 26 3274
30 % 17 26 3239
Entity #26 | Chains: CK
Imp4 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 12267
95 % 3 8 13112
90 % 3 8 12952
70 % 3 8 12242
50 % 18 26 3292
40 % 18 26 3269
30 % 18 26 3235
Entity #27 | Chains: CL
Mpp10 protein, length: 785 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14204
95 % 3 7 14525
90 % 3 7 14305
70 % 3 7 13462
50 % 3 7 12270
40 % 3 7 11521
30 % 3 7 10599
Entity #28 | Chains: CM
Sof1 protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14620
95 % 3 7 14155
90 % 3 7 13939
70 % 3 7 13134
50 % 3 7 11965
40 % 15 21 4091
30 % 15 21 4004
Entity #29 | Chains: CN,CO
Emg1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 5606
95 % 3 7 6578
90 % 3 7 6611
70 % 23 32 1250
50 % 23 32 1295
40 % 23 32 1334
30 % 23 32 1370
Entity #3 | Chains: UC
Utp3 protein, length: 648 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14345
95 % 3 7 13598
90 % 3 7 13896
70 % 3 7 12664
50 % 3 7 11527
40 % 3 7 10816
30 % 18 23 3663
Entity #30 | Chains: CP
KRR1 small subunit processome component protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 10050
95 % 3 8 10559
90 % 3 8 10454
70 % 10 18 4643
50 % 10 18 4567
40 % 10 18 4495
30 % 10 18 4395
Entity #31 | Chains: CQ
Pre-rRNA-processing protein PNO1 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14427
95 % 3 7 13771
90 % 3 7 13566
70 % 3 7 12798
50 % 3 7 11650
40 % 3 7 10935
30 % 3 7 10086
Entity #32 | Chains: CR,CS
Kre33 protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 4718
95 % 3 8 5675
90 % 3 8 5698
70 % 3 8 5532
50 % 11 16 2669
40 % 11 16 2663
30 % 11 16 2651
Entity #33 | Chains: CT
Fcf2 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13684
95 % 3 7 13507
90 % 3 7 13442
70 % 3 7 12578
50 % 3 7 11473
40 % 3 7 10746
30 % 3 7 9923
Entity #34 | Chains: Ca
40S ribosomal protein S1 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 19952
95 % 3 5 18907
90 % 3 5 18521
70 % 72 112 420
50 % 106 198 290
40 % 106 202 290
30 % 106 202 302
Entity #35 | Chains: Cb
40S ribosomal protein S4 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 22042
95 % 2 5 20259
90 % 2 5 19795
70 % 107 225 236
50 % 108 237 238
40 % 110 240 236
30 % 117 251 235
Entity #36 | Chains: Cc
40S ribosomal protein s5-like protein protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14426
95 % 3 7 13770
90 % 3 7 13565
70 % 38 123 517
50 % 113 247 217
40 % 113 247 228
30 % 113 247 236
Entity #37 | Chains: Cd
40S ribosomal protein S6 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21096
95 % 2 5 18931
90 % 2 5 18541
70 % 2 5 17144
50 % 108 225 253
40 % 108 229 250
30 % 108 229 259
Entity #38 | Chains: Ce
40S ribosomal protein S7 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14425
95 % 3 7 13769
90 % 3 7 13656
70 % 3 7 12881
50 % 109 233 243
40 % 109 233 248
30 % 111 236 248
Entity #39 | Chains: Cf
40S ribosomal protein S8 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20015
95 % 2 5 19017
90 % 2 5 18616
70 % 73 116 403
50 % 109 234 237
40 % 109 238 240
30 % 109 238 247
Entity #4 | Chains: UD
Utp4 protein, length: 884 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10389
95 % 4 8 10659
90 % 4 8 10502
70 % 4 8 10415
50 % 4 8 9404
40 % 4 8 9002
30 % 4 8 8440
Entity #40 | Chains: Cg
40S ribosomal protein s9-like protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13853
95 % 3 7 13855
90 % 3 7 13643
70 % 110 230 232
50 % 113 246 221
40 % 120 257 218
30 % 120 257 229
Entity #41 | Chains: Ch
40S ribosomal protein S13-like protein protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14079
95 % 3 7 14248
90 % 3 7 14037
70 % 111 236 228
50 % 120 254 213
40 % 120 255 222
30 % 120 255 231
Entity #42 | Chains: Ci
40S ribosomal protein S14-like protein protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14080
95 % 3 7 14249
90 % 36 102 639
70 % 111 242 215
50 % 111 243 225
40 % 111 243 231
30 % 111 243 241
Entity #43 | Chains: Cj
40S ribosomal protein S16-like protein protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14506
95 % 3 7 13941
90 % 3 7 13727
70 % 3 7 12945
50 % 110 235 235
40 % 117 246 229
30 % 117 247 237
Entity #44 | Chains: Ck
40S ribosomal protein S11-like protein protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 21629
95 % 2 5 19625
90 % 2 5 19563
70 % 74 118 385
50 % 111 242 226
40 % 111 242 232
30 % 111 242 242
Entity #45 | Chains: Cm
40S ribosomal protein S22-like protein protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14555
95 % 3 7 14038
90 % 3 7 13815
70 % 111 246 216
50 % 113 248 218
40 % 121 260 213
30 % 572 916 19
Entity #46 | Chains: Cn
40S ribosomal protein s23-like protein protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14556
95 % 3 7 14039
90 % 3 7 13816
70 % 113 250 207
50 % 120 263 196
40 % 120 263 207
30 % 120 263 221
Entity #47 | Chains: Co
40S ribosomal protein S24 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20403
95 % 2 5 19804
90 % 2 5 19218
70 % 2 5 17913
50 % 108 237 240
40 % 108 237 244
30 % 108 237 254
Entity #48 | Chains: Cp
40S ribosomal protein S28-like protein protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14557
95 % 3 7 14375
90 % 3 7 14154
70 % 110 236 225
50 % 119 250 216
40 % 119 251 226
30 % 119 251 234
Entity #49 | Chains: CU
Faf1 protein, length: 311 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 13848
95 % 3 7 13844
90 % 3 7 13630
70 % 3 7 12859
50 % 3 7 11724
40 % 3 7 10995
30 % 3 7 10140
Entity #5 | Chains: UF
Utp6 protein, length: 414 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14207
95 % 3 7 14536
90 % 3 7 14403
70 % 3 7 13470
50 % 3 7 12277
40 % 3 7 11530
30 % 3 7 10607
Entity #50 | Chains: C1
35S ribosomal RNA rna, length: 2352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: C2
U3 snoRNA rna, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: UV
U3 small nucleolar RNA-associated protein 22 protein, length: 1171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 32716
95 % 1 4 27844
90 % 1 4 26861
70 % 1 4 24373
50 % 1 4 21368
40 % 1 4 19547
30 % 1 4 17511
Entity #53 | Chains: CV
Rrp7 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 32718
95 % 1 4 27845
90 % 1 4 23136
70 % 1 4 24177
50 % 1 4 21226
40 % 1 4 19416
30 % 1 4 17512
Entity #54 | Chains: CW
Ribosome biogenesis protein ENP2 protein, length: 668 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 30705
95 % 2 4 24915
90 % 2 4 24085
70 % 2 4 21933
50 % 2 4 19348
40 % 2 4 17800
30 % 2 4 16025
Entity #55 | Chains: UT
Utp20 protein, length: 2612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 27519
95 % 2 4 27842
90 % 2 4 26860
70 % 2 4 24372
50 % 2 4 21367
40 % 2 4 19546
30 % 2 4 17510
Entity #56 | Chains: UH
Utp8 protein, length: 930 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 19360
95 % 3 6 17990
90 % 3 6 17625
70 % 3 6 16303
50 % 3 6 14693
40 % 3 6 13646
30 % 3 6 12441
Entity #57 | Chains: UE,UI
Utp5 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 7858
95 % 3 6 8403
90 % 3 6 8365
70 % 3 6 8120
50 % 3 6 7630
40 % 3 6 7365
30 % 3 6 6912
Entity #58 | Chains: US
Noc4 protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 18591
95 % 3 6 15671
90 % 3 6 16534
70 % 3 6 15434
50 % 3 6 13354
40 % 3 6 12981
30 % 3 6 11252
Entity #59 | Chains: Cl
Rps18 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17660
95 % 3 6 16657
90 % 3 6 15153
70 % 106 223 237
50 % 108 232 239
40 % 115 245 230
30 % 115 245 238
Entity #6 | Chains: UG
Utp7 protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14855
95 % 3 7 14111
90 % 3 7 14342
70 % 3 7 12615
50 % 3 7 12349
40 % 15 21 4127
30 % 15 21 4040
Entity #60 | Chains: CX
Enp1 protein, length: 480 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17859
95 % 3 6 15672
90 % 3 6 15418
70 % 3 6 14460
50 % 3 6 13133
40 % 3 6 12278
30 % 18 29 2889
Entity #61 | Chains: CY
U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein, length: 381 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 36450
95 % 2 3 28034
90 % 2 3 27036
70 % 2 3 24536
50 % 2 3 21501
40 % 2 3 19667
30 % 2 3 17618
Entity #62 | Chains: CZ
Bfr2 protein, length: 609 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 29482
95 % 2 4 26753
90 % 2 4 25795
70 % 2 4 20609
50 % 2 4 18267
40 % 2 4 16849
30 % 2 4 15197
Entity #63 | Chains: UP
Utp16 protein, length: 364 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 17954
95 % 3 6 16728
90 % 3 6 15583
70 % 3 6 15332
50 % 3 6 13873
40 % 3 6 12907
30 % 3 6 11805
Entity #7 | Chains: UJ
UTP10 protein, length: 1802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 8 13557
95 % 3 8 13289
90 % 3 8 13113
70 % 3 8 12397
50 % 3 8 11297
40 % 3 8 10605
30 % 3 8 9805
Entity #8 | Chains: UK
U3 small nucleolar RNA-associated protein 11 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14208
95 % 3 7 14537
90 % 3 7 14312
70 % 3 7 13471
50 % 3 7 12278
40 % 3 7 11531
30 % 3 7 10608
Entity #9 | Chains: UL
Utp12 protein, length: 962 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 14854
95 % 3 7 14606
90 % 3 7 14394
70 % 3 7 13556
50 % 3 7 12348
40 % 17 25 3350
30 % 17 25 3312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6RXT 9 UL Utp12 209285
2 6RXU 9 UL Utp12 209285
3 6RXV 9 UL Utp12 209285
4 6RXX 6 UL Utp12 209285
5 6RXY 9 UL Utp12 209285
6 6RXZ 9 UL Utp12 209285
7 5OQL 9 I Utp12 209285