Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 4069
95 % 6 12 3451
90 % 7 14 2963
70 % 6 9 5043
50 % 182 254 91
40 % 182 254 105
30 % 182 254 110
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 237 39
95 % 183 259 35
90 % 190 268 38
70 % 191 267 46
50 % 191 267 83
40 % 191 267 97
30 % 191 267 100
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8537
95 % 161 239 58
90 % 154 222 69
70 % 157 228 76
50 % 157 228 100
40 % 157 228 119
30 % 157 228 126
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2824
95 % 72 107 206
90 % 160 231 67
70 % 168 242 71
50 % 173 249 92
40 % 173 249 107
30 % 173 249 112
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33273
95 % 1 3 27516
90 % 1 3 26605
70 % 1 3 26182
50 % 1 3 22939
40 % 1 3 19359
30 % 1 3 18822

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures