Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3812
95 % 7 13 3195
90 % 8 15 2808
70 % 7 10 4500
50 % 195 271 81
40 % 195 271 96
30 % 195 271 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 253 23
95 % 195 275 34
90 % 202 284 35
70 % 203 283 46
50 % 203 283 78
40 % 203 283 93
30 % 203 283 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8750
95 % 173 255 38
90 % 166 238 66
70 % 176 253 55
50 % 183 260 88
40 % 183 260 102
30 % 183 260 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2327
95 % 136 172 103
90 % 173 248 53
70 % 181 259 53
50 % 186 266 84
40 % 186 266 100
30 % 186 266 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36302
95 % 1 3 29273
90 % 1 3 28206
70 % 1 3 25478
50 % 1 3 22341
40 % 1 3 20457
30 % 1 3 18335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures