Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 4142
95 % 6 12 3424
90 % 7 14 2923
70 % 6 9 4987
50 % 176 246 94
40 % 176 246 107
30 % 176 246 109
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 229 41
95 % 177 251 43
90 % 184 260 39
70 % 185 259 48
50 % 185 259 84
40 % 185 259 98
30 % 185 259 100
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8329
95 % 154 230 61
90 % 150 216 70
70 % 153 222 76
50 % 153 222 100
40 % 153 222 117
30 % 153 222 126
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 3468
95 % 121 155 116
90 % 152 221 68
70 % 160 232 73
50 % 164 238 97
40 % 164 238 110
30 % 164 238 115
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 32605
95 % 1 3 27318
90 % 1 3 26392
70 % 1 3 23975
50 % 1 3 21091
40 % 1 3 19292
30 % 1 3 17268

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures