6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3380
95 % 8 14 3017
90 % 9 16 2683
70 % 8 11 4184
50 % 211 289 81
40 % 211 289 97
30 % 211 289 97
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 269 20
95 % 212 294 26
90 % 219 303 20
70 % 220 302 33
50 % 220 302 74
40 % 220 302 91
30 % 220 302 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 9144
95 % 184 268 38
90 % 171 245 66
70 % 184 263 53
50 % 197 276 84
40 % 197 276 103
30 % 197 276 101
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2483
95 % 147 183 84
90 % 187 264 45
70 % 195 275 51
50 % 200 282 83
40 % 200 282 101
30 % 200 282 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 35354
95 % 1 3 29205
90 % 1 3 28133
70 % 1 3 25464
50 % 1 3 22286
40 % 1 3 20375
30 % 1 3 18247

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NQU 1 A Histone H3-like centromeric protein A 9606
2 3WTP 1 A Histone H3-like centromeric protein A 9606
3 3AN2 1 A, E Histone H3-like centromeric protein A 9606
4 6TEM 1 A, E Histone H3-like centromeric protein A 9606
5 6L49 1 A, E Histone H3-like centromeric protein A 9606
6 6SEG 1 A, E Histone H3-like centromeric protein A 9606
7 6SE0 1 A, E Histone H3-like centromeric protein A 9606
8 6SE6 1 A, E Histone H3-like centromeric protein A 9606
9 6SEE 1 A, E Histone H3-like centromeric protein A 9606
10 6SEF 1 A, E Histone H3-like centromeric protein A 9606
11 6C0W 1 A, E Histone H3-like centromeric protein A 9606