Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3681
95 % 7 13 3282
90 % 8 15 2830
70 % 7 10 4634
50 % 193 269 81
40 % 193 269 99
30 % 193 269 98
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 251 24
95 % 193 273 33
90 % 200 282 36
70 % 201 281 46
50 % 201 281 78
40 % 201 281 96
30 % 201 281 94
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8485
95 % 171 253 37
90 % 164 236 65
70 % 174 251 58
50 % 181 258 88
40 % 181 258 104
30 % 181 258 104
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2309
95 % 135 171 103
90 % 170 245 63
70 % 178 256 54
50 % 178 256 90
40 % 178 256 106
30 % 178 256 107
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33709
95 % 1 3 27945
90 % 1 3 29298
70 % 1 3 24592
50 % 1 3 23296
40 % 1 3 21290
30 % 1 3 17574

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NQU 1 A Histone H3-like centromeric protein A 9606
2 3WTP 1 A Histone H3-like centromeric protein A 9606
3 3AN2 1 A, E Histone H3-like centromeric protein A 9606
4 6L49 1 A, E Histone H3-like centromeric protein A 9606
5 6SEG 1 A, E Histone H3-like centromeric protein A 9606
6 6SE0 1 A, E Histone H3-like centromeric protein A 9606
7 6SE6 1 A, E Histone H3-like centromeric protein A 9606
8 6SEE 1 A, E Histone H3-like centromeric protein A 9606
9 6SEF 1 A, E Histone H3-like centromeric protein A 9606
10 6C0W 1 A, E Histone H3-like centromeric protein A 9606