6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3614
95 % 8 14 3260
90 % 9 16 2889
70 % 8 11 4450
50 % 234 312 67
40 % 234 312 87
30 % 234 312 94
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 214 293 9
95 % 236 318 17
90 % 243 327 19
70 % 244 326 25
50 % 244 326 58
40 % 244 326 79
30 % 244 326 85
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6039
95 % 209 293 19
90 % 192 266 45
70 % 205 284 40
50 % 218 297 73
40 % 218 297 95
30 % 218 297 98
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1587
95 % 163 199 76
90 % 211 288 27
70 % 219 299 32
50 % 224 306 68
40 % 224 306 90
30 % 224 306 96
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36402
95 % 1 3 32849
90 % 1 3 31500
70 % 1 3 28196
50 % 1 3 24679
40 % 1 3 22546
30 % 1 3 18681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3R45 1 A Histone H3-like centromeric protein A 9606
2 3NQU 1 A Histone H3-like centromeric protein A 9606
3 3WTP 1 A Histone H3-like centromeric protein A 9606
4 3AN2 1 A, E Histone H3-like centromeric protein A 9606
5 6TEM 1 A, E Histone H3-like centromeric protein A 9606
6 6L49 1 A, E Histone H3-like centromeric protein A 9606
7 6SEG 1 A, E Histone H3-like centromeric protein A 9606
8 6SE0 1 A, E Histone H3-like centromeric protein A 9606
9 6SE6 1 A, E Histone H3-like centromeric protein A 9606
10 6SEE 1 A, E Histone H3-like centromeric protein A 9606
11 6SEF 1 A, E Histone H3-like centromeric protein A 9606
12 6O1D 1 A, E Histone H3-like centromeric protein A 9606
13 6E0C 1 A, E Histone H3-like centromeric protein A 9606
14 6E0P 1 A, E Histone H3-like centromeric protein A 9606
15 6C0W 1 A, E Histone H3-like centromeric protein A 9606
16 6BUZ 1 A, E Histone H3-like centromeric protein A 9606