Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3563
95 % 7 13 3112
90 % 8 15 2763
70 % 7 10 4437
50 % 187 259 87
40 % 187 259 101
30 % 187 259 100
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 241 37
95 % 187 263 34
90 % 194 272 37
70 % 195 271 46
50 % 195 271 82
40 % 195 271 96
30 % 195 271 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8604
95 % 165 243 46
90 % 158 226 69
70 % 161 232 77
50 % 161 232 100
40 % 161 232 116
30 % 161 232 120
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2290
95 % 130 166 110
90 % 164 235 66
70 % 172 246 65
50 % 177 253 92
40 % 177 253 105
30 % 177 253 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33470
95 % 1 3 30289
90 % 1 3 29159
70 % 1 3 26293
50 % 1 3 21338
40 % 1 3 19627
30 % 1 3 18942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NQU 1 A Histone H3-like centromeric protein A 9606
2 3WTP 1 A Histone H3-like centromeric protein A 9606
3 3AN2 1 A, E Histone H3-like centromeric protein A 9606
4 6L49 1 A, E Histone H3-like centromeric protein A 9606
5 6SEG 1 A, E Histone H3-like centromeric protein A 9606
6 6SE0 1 A, E Histone H3-like centromeric protein A 9606
7 6SE6 1 A, E Histone H3-like centromeric protein A 9606
8 6SEE 1 A, E Histone H3-like centromeric protein A 9606
9 6SEF 1 A, E Histone H3-like centromeric protein A 9606
10 6O1D 1 A, E Histone H3-like centromeric protein A 9606
11 6E0C 1 A, E Histone H3-like centromeric protein A 9606
12 6E0P 1 A, E Histone H3-like centromeric protein A 9606
13 6C0W 1 A, E Histone H3-like centromeric protein A 9606