6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3748
95 % 8 14 3221
90 % 9 16 2860
70 % 8 11 4479
50 % 240 318 65
40 % 240 318 86
30 % 240 318 94
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 220 299 9
95 % 242 324 17
90 % 249 333 19
70 % 250 332 25
50 % 250 332 58
40 % 250 332 78
30 % 250 332 81
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6007
95 % 215 299 19
90 % 198 272 45
70 % 211 290 39
50 % 224 303 69
40 % 224 303 91
30 % 224 303 97
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1606
95 % 169 205 75
90 % 217 294 24
70 % 225 305 31
50 % 230 312 67
40 % 230 312 88
30 % 230 312 95
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 38502
95 % 1 3 30652
90 % 1 3 30153
70 % 1 3 26588
50 % 1 3 23321
40 % 1 3 21317
30 % 1 3 20315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NQU 1 A Histone H3-like centromeric protein A 9606
2 3WTP 1 A Histone H3-like centromeric protein A 9606
3 3AN2 1 A, E Histone H3-like centromeric protein A 9606
4 6TEM 1 A, E Histone H3-like centromeric protein A 9606
5 6L49 1 A, E Histone H3-like centromeric protein A 9606
6 6SEG 1 A, E Histone H3-like centromeric protein A 9606
7 6SE0 1 A, E Histone H3-like centromeric protein A 9606
8 6SE6 1 A, E Histone H3-like centromeric protein A 9606
9 6SEE 1 A, E Histone H3-like centromeric protein A 9606
10 6SEF 1 A, E Histone H3-like centromeric protein A 9606
11 6O1D 1 A, E Histone H3-like centromeric protein A 9606
12 6E0C 1 A, E Histone H3-like centromeric protein A 9606
13 6E0P 1 A, E Histone H3-like centromeric protein A 9606
14 6C0W 1 A, E Histone H3-like centromeric protein A 9606