Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3683
95 % 7 13 3297
90 % 8 15 2831
70 % 7 10 4635
50 % 194 270 80
40 % 194 270 96
30 % 194 270 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 252 23
95 % 194 274 33
90 % 201 283 36
70 % 202 282 46
50 % 202 282 77
40 % 202 282 94
30 % 202 282 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8678
95 % 172 254 37
90 % 165 237 64
70 % 175 252 57
50 % 182 259 86
40 % 182 259 101
30 % 182 259 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2325
95 % 136 172 103
90 % 172 247 56
70 % 180 258 54
50 % 185 265 84
40 % 185 265 100
30 % 185 265 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 35441
95 % 1 3 28330
90 % 1 3 27279
70 % 1 3 24757
50 % 1 3 21753
40 % 1 3 19888
30 % 1 3 17859

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 6KVD 3 B, F Histone H4 9606
21 5X7X 2 B, F Histone H4 9606
22 5B31 2 B, F Histone H4 9606
23 5B1L 2 B, F Histone H4 10090
24 6K1K 2 B, F Histone H4 9606
25 3UTB 2 B, F Histone H4 8355
26 1M19 3 B, F Histone H4 8355
27 5AVB 2 B, F Histone H4 9606
28 5AVC 2 B, F Histone H4 9606
29 5AV5 2 B, F Histone H4 9606
30 3C1B 2 B, F Histone H4 8355
31 5B1M 2 B, F Histone H4 10090
32 5JA4 2 B Histone H4 9606
33 5OMX 4 B, F Histone H4 8355
34 6JR1 2 B, F Histone H4 9606
35 5Z30 2 B, F Histone H4 9606
36 5JRG 2 B, F Histone H4 9606
37 3UT9 2 B, F Histone H4 8355
38 5B32 2 B, F Histone H4 9606
39 3R45 2 B Histone H4 9606
40 4WU8 4 B, F Histone H4 8355
41 3MGR 2 B, F Histone H4 8355
42 1F66 3 B, F HISTONE H4 10090
43 3AZG 2 B, F Histone H4 9606
44 1M18 3 B, F Histone H4 8355
45 5B2J 2 B, F Histone H4 9606
46 1P3L 3 B, F Histone H4 8355
47 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
48 5B0Y 2 B, F Histone H4 9606
49 6JR0 2 B, F Histone H4 9606
50 2CV5 3 B, F Histone H4 9606
51 5CP6 4 B, F Histone H4 8355
52 5ZBX 2 B, F Histone H4 9606
53 5XF6 2 B, F Histone H4 8355
54 3MGP 2 B, F Histone H4 8355
55 3MVD 2 B, F Histone H4 8355
56 4J8U 2 B, F Histone H4 8355
57 4WU9 2 B, F Histone H4 8355
58 3REH 2 B, F Histone H4 8355
59 5Z23 2 B, F Histone H4 9606
60 3NQU 2 B Histone H4 9606
61 5BNV 2 B, E Histone H4 9606
62 3AFA 2 B, F Histone H4 9606
63 5E5A 3 B, F Histone H4 8355
64 3REJ 2 B, F Histone H4 8355
65 3AZF 2 B, F Histone H4 9606
66 5GTC 2 B, F Histone H4 9606
67 3AV1 2 B, F Histone H4 9606
68 1M1A 3 B, F Histone H4 8355
69 5CPK 2 B, F Histone H4 9606
70 5AY8 2 B, F Histone H4 9606
71 3MNN 2 B, F Histone H4 8355
72 5BO0 2 B Histone H4 9606
73 4J8W 2 B, F Histone H4 8355
74 1P34 3 B, F Histone H4 8355
75 5XF3 2 B, F Histone H4 9606
76 3X1V 3 B, F Histone H4 9606
77 5ONG 4 B, F Histone H4 8355
78 5ONW 4 B, F Histone H4 8355
79 5DNM 2 B, F Histone H4 8355
80 4HGA 3 C Histone H4 9606
81 6K1I 2 B, F Histone H4 9606
82 3MGQ 2 B, F Histone H4 8355
83 3WTP 2 B, F Histone H4 9606
84 3X1T 3 B, F Histone H4 9606
85 2NZD 4 B, F Histone H4 8355
86 3A6N 2 B, F Histone H4 9606
87 5DNN 2 B, F Histone H4 8355
88 5GT3 2 B, F Histone H4 9606
89 5GT0 2 B, F Histone H4 9606
90 3LJA 2 B, F Histone H4 8355
91 3TU4 2 B, F Histone H4 8355
92 4Z2M 3 H, J Histone H4 9606
93 1KX4 3 B, F histone H4 8355
94 1P3M 3 B, F Histone H4 8355
95 4J8V 2 B, F Histone H4 8355
96 5B33 2 B, F Histone H4 9606
97 3X1S 2 B, F Histone H4 9606
98 3LZ0 2 B, F Histone H4 8355
99 1P3K 3 B, F Histone H4 8355
100 5B2I 2 B, F Histone H4 9606
101 1P3A 3 B, F Histone H4 8355
102 3LZ1 2 B, F Histone H4 8355
103 2IO5 3 C Histone H4 8355
104 5GXQ 2 B, F Histone H4 9606
105 2F8N 3 B, F Histone H4 8355
106 4Z5T 2 B, F Histone H4 9606
107 1U35 3 B, F Hist1h4i protein 10090
108 5XM0 2 B, F Histone H4 10090
109 3AV2 2 B, F Histone H4 9606
110 3AYW 2 B, F Histone H4 9606
111 5XF5 2 B, F Histone H4 9606
112 3REK 2 B, F Histone H4 8355
113 4KGC 2 B, F Histone H4 8355
114 1ZLA 3 B, F Histone H4 8355
115 5GSU 2 B, F Histone H4 9606
116 5XF4 2 B, F Histone H4 9606
117 3REL 2 B, F Histone H4 8355
118 5GSE 2 B, F, L, P Histone H4 9606
119 3REI 2 B, F Histone H4 8355
120 3WKJ 2 B, F Histone H4 9606
121 4J8X 2 B, F Histone H4 8355
122 3LEL 2 B, F, L, P Histone H4 8355
123 3KUY 2 B, F Histone H4 8355
124 4R8P 2 B, F Histone H4 8355
125 3X1U 3 B, F Histone H4 9606
126 3MGS 2 B, F Histone H4 8355
127 3WA9 2 B, F Histone H4 9606
128 3C1C 2 B, F Histone H4 8355
129 3AZH 2 B, F Histone H4 9606
130 3WAA 2 B, F Histone H4 9606
131 5CPI 2 B, F Histone H4 9606
132 3AZE 2 B, F Histone H4 9606
133 3W96 2 B, F Histone H4 9606
134 6OM3 2 B, F, N, R Histone H4 8355
135 5XM1 2 B, F Histone H4 10090
136 6K1J 2 B, F Histone H4 9606
137 5CPJ 2 B, F Histone H4 9606
138 5B24 2 B, F Histone H4 9606
139 5BS7 2 C, D Histone H4 8355
140 5C3I 3 C, G, K, O, S, W Histone H4 9606
141 4LD9 2 B, F Histone H4 8355
142 3O62 2 B, F Histone H4 8355
143 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
144 5KDM 2 B Histone H4 9606
145 3W97 2 B, F Histone H4 9606
146 4YM5 2 B, F Histone H4 9606
147 4YM6 2 B, F Histone H4 9606
148 2FJ7 4 B, F Histone H4 8355
149 3W98 2 B, F Histone H4 9606
150 4ZUX 2 B, F, L, P Histone H4 8355
151 3AN2 2 B, F Histone H4 9606
152 5BSA 2 C, D Histone H4 8355
153 3B6F 4 B, F Histone H4 8355
154 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
155 3B6G 4 B, F Histone H4 8355
156 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
157 3KXB 2 B, F Histone H4 8355
158 5HQ2 2 B Histone H4 8355
159 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
160 5OXV 4 B, F, L, P Histone H4 8355
161 1ZBB 4 B, F, b, f Histone H4 8355
162 6VEN 2 B, F Histone H4 8355
163 6V92 24 b, f Histone H4 9606
164 6T9L 2 B, F Histone H4 8355
165 6UPK 2 B, F Histone H4 9606
166 6UPL 2 B, F Histone H4 9606
167 6L49 2 B, F, L, P, T, X Histone H4 9606
168 6L4A 2 B, F, L, P, T, X Histone H4 9606
169 6UGM 2 B, F Histone H4 8355
170 6UH5 2 B, F Histone H4 8355
171 6KW4 2 B, R Histone H4 8355
172 6KW3 1 B, R Histone H4 8355
173 6SEG 2 B, F Histone H4 9606
174 6SE0 2 B, F Histone H4 9606
175 6SE6 2 B, F Histone H4 9606
176 6SEE 2 B, F Histone H4 9606
177 6SEF 2 B, F Histone H4 9606
178 6PX1 2 B, F Histone H4 8355
179 6PX3 2 B, F Histone H4 8355
180 6PWV 5 H, L Histone H4 8355
181 6PWW 5 H, L Histone H4 8355
182 6PWX 3 H, L Histone H4 8355
183 6KIU 2 B, F Histone H4 8355
184 6KIV 2 B, F Histone H4 8355
185 6KIW 2 B, F Histone H4 8355
186 6KIX 2 B, F Histone H4 8355
187 6KIZ 2 B, F Histone H4 8355
188 6S01 2 B, F Histone H4 8355
189 6K1P 2 B, F Histone H4 8355
190 6RNY 2 B, F Histone H4 9606
191 6JYL 2 B, F Histone H4 8355
192 6R8Y 2 B Histone H4 9606
193 6R8Y 5 F Histone H4 9606
194 6R8Z 2 B, F Histone H4 9606
195 6R90 2 B, F Histone H4 9606
196 6R91 2 B, F Histone H4 9606
197 6R92 5 B, F Histone H4 9606
198 6R93 4 B, F Histone H4 9606
199 6R94 4 B, F Histone H4 9606
200 6R1U 2 B, F Histone H4 8355
201 6R25 5 B, F H4 8355
202 6O96 2 B, F Histone H4 8355
203 6R0C 2 B, F Histone H4 9606
204 6O22 5 F Histone H4 8355
205 6O1D 2 B, F Histone H4 9606
206 6NZO 2 B, F Histone H4 8355
207 6J99 2 B, F Histone H4 8355
208 6NQA 3 B, F Histone H4 8355
209 6NOG 2 B, F Histone H4 8355
210 6NN6 2 B, F Histone H4 8355
211 6J4W 20 b, f Histone H4 9606
212 6J4X 20 b, f Histone H4 9606
213 6J4Y 20 b, f Histone H4 9606
214 6J4Z 19 b, f Histone H4 9606
215 6J50 19 b, f Histone H4 9606
216 6J51 20 b, f Histone H4 9606
217 6NJ9 1 B, F Histone H4 8355
218 6NE3 2 B, F Histone H4 8355
219 6I84 5 O, U Histone H4 8355
220 6IRO 3 B, F Histone H4 8355
221 6IR9 20 b, f Histone H4 9606
222 6INQ 17 b, f Histone H4 9606
223 6MUO 2 B, F Histone H4 9606
224 6MUP 2 B, F Histone H4 9606
225 6HTS 6 J, N Histone H4 9606
226 6E0C 2 B, F Histone H4 9606
227 6E0P 2 B, F Histone H4 9606
228 6A5O 17 b, f Histone H4 9606
229 6A5P 17 b, f Histone H4 9606
230 6A5R 17 b, f Histone H4 9606
231 6A5T 17 b, f Histone H4 9606
232 6A5U 17 b, f Histone H4 9606
233 6A5L 17 b, f Histone H4 9606
234 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
235 6FTX 2 B, F Histone H4 8355
236 6FML 10 N, R Histone H4 9606
237 5Z3L 2 B, F Histone H4 8355
238 5Z3O 2 B, F Histone H4 8355
239 5Z3T 3 B, F Histone H4 8355
240 5Z3U 3 B, F Histone H4 8355
241 5Z3V 3 B, F Histone H4 8355
242 6C0W 2 B, F Histone H4 9606
243 6BUZ 2 B, F Histone H4 9606
244 6ESF 2 B, F Histone H4 8355
245 6ESG 2 B, F Histone H4 8355
246 6ESH 2 B, F Histone H4 8355
247 6ESI 2 B, F Histone H4 8355
248 5O9G 2 B, F Histone H4 8355
249 5X0X 2 B, F Histone H4 8355
250 5X0Y 2 B, F Histone H4 8355
251 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
252 3C9K 4 D, H Histone H4 9031