6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3842
95 % 8 14 3307
90 % 9 16 2922
70 % 8 11 4641
50 % 241 319 63
40 % 241 319 83
30 % 241 319 91
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 300 9
95 % 243 325 17
90 % 250 334 18
70 % 251 333 25
50 % 251 333 58
40 % 251 333 77
30 % 251 333 81
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6122
95 % 216 300 18
90 % 199 273 44
70 % 212 291 38
50 % 225 304 69
40 % 225 304 88
30 % 225 304 97
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1605
95 % 169 205 75
90 % 218 295 25
70 % 226 306 31
50 % 231 313 67
40 % 231 313 86
30 % 231 313 94
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36825
95 % 1 3 30394
90 % 1 3 29239
70 % 1 3 26344
50 % 1 3 25020
40 % 1 3 22794
30 % 1 3 18885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 6JOU 2 B, F Histone H4 9606
18 1HQ3 4 D, H HISTONE H4-VI 9031
19 5BNX 2 B Histone H4 9606
20 3UTA 2 B, F Histone H4 8355
21 6KVD 3 B, F Histone H4 9606
22 5X7X 2 B, F Histone H4 9606
23 5B31 2 B, F Histone H4 9606
24 5B1L 2 B, F Histone H4 10090
25 6K1K 2 B, F Histone H4 9606
26 3UTB 2 B, F Histone H4 8355
27 1M19 3 B, F Histone H4 8355
28 5AVB 2 B, F Histone H4 9606
29 5AVC 2 B, F Histone H4 9606
30 5AV5 2 B, F Histone H4 9606
31 3C1B 2 B, F Histone H4 8355
32 5B1M 2 B, F Histone H4 10090
33 5JA4 2 B Histone H4 9606
34 5OMX 4 B, F Histone H4 8355
35 6JR1 2 B, F Histone H4 9606
36 5Z30 2 B, F Histone H4 9606
37 5JRG 2 B, F Histone H4 9606
38 3UT9 2 B, F Histone H4 8355
39 5B32 2 B, F Histone H4 9606
40 3R45 2 B Histone H4 9606
41 4WU8 4 B, F Histone H4 8355
42 3MGR 2 B, F Histone H4 8355
43 1F66 3 B, F HISTONE H4 10090
44 3AZG 2 B, F Histone H4 9606
45 1M18 3 B, F Histone H4 8355
46 5B2J 2 B, F Histone H4 9606
47 6V2K 2 B, F Histone H4 9606
48 1P3L 3 B, F Histone H4 8355
49 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
50 5B0Y 2 B, F Histone H4 9606
51 6JR0 2 B, F Histone H4 9606
52 2CV5 3 B, F Histone H4 9606
53 5CP6 4 B, F Histone H4 8355
54 5ZBX 2 B, F Histone H4 9606
55 5XF6 2 B, F Histone H4 8355
56 3MGP 2 B, F Histone H4 8355
57 3MVD 2 B, F Histone H4 8355
58 4J8U 2 B, F Histone H4 8355
59 4WU9 2 B, F Histone H4 8355
60 3REH 2 B, F Histone H4 8355
61 5Z23 2 B, F Histone H4 9606
62 3NQU 2 B Histone H4 9606
63 5BNV 2 B, E Histone H4 9606
64 3AFA 2 B, F Histone H4 9606
65 5E5A 3 B, F Histone H4 8355
66 3REJ 2 B, F Histone H4 8355
67 3AZF 2 B, F Histone H4 9606
68 5GTC 2 B, F Histone H4 9606
69 3AV1 2 B, F Histone H4 9606
70 1M1A 3 B, F Histone H4 8355
71 5CPK 2 B, F Histone H4 9606
72 5AY8 2 B, F Histone H4 9606
73 3MNN 2 B, F Histone H4 8355
74 5BO0 2 B Histone H4 9606
75 4J8W 2 B, F Histone H4 8355
76 1P34 3 B, F Histone H4 8355
77 5XF3 2 B, F Histone H4 9606
78 3X1V 3 B, F Histone H4 9606
79 5ONG 4 B, F Histone H4 8355
80 5ONW 4 B, F Histone H4 8355
81 5DNM 2 B, F Histone H4 8355
82 4HGA 3 C Histone H4 9606
83 6K1I 2 B, F Histone H4 9606
84 3MGQ 2 B, F Histone H4 8355
85 3WTP 2 B, F Histone H4 9606
86 3X1T 3 B, F Histone H4 9606
87 2NZD 4 B, F Histone H4 8355
88 3A6N 2 B, F Histone H4 9606
89 5DNN 2 B, F Histone H4 8355
90 5GT3 2 B, F Histone H4 9606
91 5GT0 2 B, F Histone H4 9606
92 3LJA 2 B, F Histone H4 8355
93 3TU4 2 B, F Histone H4 8355
94 4Z2M 3 H, J Histone H4 9606
95 1KX4 3 B, F histone H4 8355
96 1P3M 3 B, F Histone H4 8355
97 4J8V 2 B, F Histone H4 8355
98 5B33 2 B, F Histone H4 9606
99 3X1S 2 B, F Histone H4 9606
100 3LZ0 2 B, F Histone H4 8355
101 1P3K 3 B, F Histone H4 8355
102 5B2I 2 B, F Histone H4 9606
103 1P3A 3 B, F Histone H4 8355
104 3LZ1 2 B, F Histone H4 8355
105 2IO5 3 C Histone H4 8355
106 5GXQ 2 B, F Histone H4 9606
107 2F8N 3 B, F Histone H4 8355
108 4Z5T 2 B, F Histone H4 9606
109 1U35 3 B, F Hist1h4i protein 10090
110 5XM0 2 B, F Histone H4 10090
111 3AV2 2 B, F Histone H4 9606
112 3AYW 2 B, F Histone H4 9606
113 5XF5 2 B, F Histone H4 9606
114 3REK 2 B, F Histone H4 8355
115 4KGC 2 B, F Histone H4 8355
116 1ZLA 3 B, F Histone H4 8355
117 5GSU 2 B, F Histone H4 9606
118 5XF4 2 B, F Histone H4 9606
119 3REL 2 B, F Histone H4 8355
120 5GSE 2 B, F, L, P Histone H4 9606
121 3REI 2 B, F Histone H4 8355
122 3WKJ 2 B, F Histone H4 9606
123 4J8X 2 B, F Histone H4 8355
124 3LEL 2 B, F, L, P Histone H4 8355
125 3KUY 2 B, F Histone H4 8355
126 4R8P 2 B, F Histone H4 8355
127 3X1U 3 B, F Histone H4 9606
128 3MGS 2 B, F Histone H4 8355
129 3WA9 2 B, F Histone H4 9606
130 3C1C 2 B, F Histone H4 8355
131 3AZH 2 B, F Histone H4 9606
132 3WAA 2 B, F Histone H4 9606
133 5CPI 2 B, F Histone H4 9606
134 3AZE 2 B, F Histone H4 9606
135 6LA8 2 B, F, L, P Histone H4 9606
136 3W96 2 B, F Histone H4 9606
137 6OM3 2 B, F, N, R Histone H4 8355
138 5XM1 2 B, F Histone H4 10090
139 6K1J 2 B, F Histone H4 9606
140 5CPJ 2 B, F Histone H4 9606
141 6LA9 2 B, F, L, P Histone H4 9606
142 5B24 2 B, F Histone H4 9606
143 5BS7 2 C, D Histone H4 8355
144 5C3I 3 C, G, K, O, S, W Histone H4 9606
145 4LD9 2 B, F Histone H4 8355
146 3O62 2 B, F Histone H4 8355
147 6M44 2 B, F, L, P Histone H4 9606
148 6KXV 2 B, F Histone H4 9606
149 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
150 5KDM 2 B Histone H4 9606
151 3W97 2 B, F Histone H4 9606
152 4YM5 2 B, F Histone H4 9606
153 4YM6 2 B, F Histone H4 9606
154 2FJ7 4 B, F Histone H4 8355
155 3W98 2 B, F Histone H4 9606
156 4ZUX 2 B, F, L, P Histone H4 8355
157 6M3V 2 B, F, L, P Histone H4 9606
158 3AN2 2 B, F Histone H4 9606
159 5BSA 2 C, D Histone H4 8355
160 6VYP 2 B, F, b, f Histone H4 8355
161 3B6F 4 B, F Histone H4 8355
162 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
163 3B6G 4 B, F Histone H4 8355
164 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
165 3KXB 2 B, F Histone H4 8355
166 5HQ2 2 B Histone H4 8355
167 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
168 5OXV 4 B, F, L, P Histone H4 8355
169 1ZBB 4 B, F, b, f Histone H4 8355
170 7K63 2 B, F Histone H4 9606
171 7K5X 2 B, F Histone H4 9606
172 7K5Y 2 B, F Histone H4 9606
173 7K60 2 B, F Histone H4 9606
174 7K61 2 B, F Histone H4 9606
175 7CRO 2 B, F Histone H4 8355
176 7CRP 2 B, F Histone H4 8355
177 7CRQ 2 B, F Histone H4 8355
178 7CRR 2 B, F Histone H4 8355
179 7A08 7 e, i Histone H4 9606
180 7JO9 2 B, F Histone H4 9606
181 7JOA 2 B, F Histone H4 9606
182 6XJD 2 B, F Histone H4 9606
183 6X59 2 B, F Histone H4 9606
184 6X5A 2 B, F Histone H4 9606
185 6X0N 2 B, F, b, f Histone H4 8355
186 6WZ5 2 B, F Histone H4 8355
187 6WZ9 2 B, F Histone H4 8355
188 7C0M 2 B, F, b, f Histone H4 9606
189 6YOV 6 F Histone H4 9606
190 6M4H 4 B, F Histone H4 9606
191 6M4D 2 B, F Histone H4 9606
192 6M4G 4 B, F Histone H4 9606
193 6VZ4 2 B, F Histone H4 8355
194 6Y5D 2 B, F, N, R Histone H4 9606
195 6LTJ 2 B, F Histone H4 8355
196 6VEN 2 B, F Histone H4 8355
197 6V92 24 b, f Histone H4 9606
198 6TEM 2 B, F Histone H4 8355
199 6TDA 2 B, F Histone H4 8355
200 6UXW 2 S, W Histone H4 8355
201 6T9L 2 B, F Histone H4 8355
202 6USJ 4 B, F, L, P Histone H4 9606
203 6T90 2 B, F Histone H4 9606
204 6T93 2 B, F Histone H4 9606
205 6T79 2 B, F Histone H4 9606
206 6T7A 2 B, F Histone H4 9606
207 6T7B 2 B, F Histone H4 9606
208 6T7C 2 B, F Histone H4 9606
209 6T7D 2 B, F Histone H4 9606
210 6UPK 2 B, F Histone H4 9606
211 6UPL 2 B, F Histone H4 9606
212 6L49 2 B, F, L, P, T, X Histone H4 9606
213 6L4A 2 B, F, L, P, T, X Histone H4 9606
214 6UGM 2 B, F Histone H4 8355
215 6UH5 2 B, F Histone H4 8355
216 6KW4 2 B, R Histone H4 8355
217 6KW5 13 S, W Histone H4 8355
218 6KW3 1 B, R Histone H4 8355
219 6SEG 2 B, F Histone H4 9606
220 6SE0 2 B, F Histone H4 9606
221 6SE6 2 B, F Histone H4 9606
222 6SEE 2 B, F Histone H4 9606
223 6SEF 2 B, F Histone H4 9606
224 6PX1 2 B, F Histone H4 8355
225 6PX3 2 B, F Histone H4 8355
226 6PWV 5 H, L Histone H4 8355
227 6PWW 5 H, L Histone H4 8355
228 6PWX 3 H, L Histone H4 8355
229 6KIU 2 B, F Histone H4 8355
230 6KIV 2 B, F Histone H4 8355
231 6KIW 2 B, F Histone H4 8355
232 6KIX 2 B, F Histone H4 8355
233 6KIZ 2 B, F Histone H4 8355
234 6S01 2 B, F Histone H4 8355
235 6RYU 2 B, F Histone H4 8355
236 6PA7 2 B, F Histone H4 8355
237 6RYR 2 B, F Histone H4 8355
238 6K1P 2 B, F Histone H4 8355
239 6RNY 2 B, F Histone H4 9606
240 6JYL 2 B, F Histone H4 8355
241 6R8Y 2 B Histone H4 9606
242 6R8Y 5 F Histone H4 9606
243 6R8Z 2 B, F Histone H4 9606
244 6R90 2 B, F Histone H4 9606
245 6R91 2 B, F Histone H4 9606
246 6R92 5 B, F Histone H4 9606
247 6R93 4 B, F Histone H4 9606
248 6R94 4 B, F Histone H4 9606
249 6R1U 2 B, F Histone H4 8355
250 6R25 5 B, F H4 8355
251 6O96 2 B, F Histone H4 8355
252 6R0C 2 B, F Histone H4 9606
253 6O22 5 F Histone H4 8355
254 6O1D 2 B, F Histone H4 9606
255 6NZO 2 B, F Histone H4 8355
256 6J99 2 B, F Histone H4 8355
257 6NQA 3 B, F Histone H4 8355
258 6NOG 2 B, F Histone H4 8355
259 6NN6 2 B, F Histone H4 8355
260 6J4W 20 b, f Histone H4 9606
261 6J4X 20 b, f Histone H4 9606
262 6J4Y 20 b, f Histone H4 9606
263 6J4Z 19 b, f Histone H4 9606
264 6J50 19 b, f Histone H4 9606
265 6J51 20 b, f Histone H4 9606
266 6NJ9 1 B, F Histone H4 8355
267 6NE3 2 B, F Histone H4 8355
268 6I84 5 O, U Histone H4 8355
269 6IRO 3 B, F Histone H4 8355
270 6IR9 20 b, f Histone H4 9606
271 6INQ 17 b, f Histone H4 9606
272 6MUO 2 B, F Histone H4 9606
273 6MUP 2 B, F Histone H4 9606
274 6HTS 6 J, N Histone H4 9606
275 6E0C 2 B, F Histone H4 9606
276 6E0P 2 B, F Histone H4 9606
277 6A5O 17 b, f Histone H4 9606
278 6A5P 17 b, f Histone H4 9606
279 6A5R 17 b, f Histone H4 9606
280 6A5T 17 b, f Histone H4 9606
281 6A5U 17 b, f Histone H4 9606
282 6A5L 17 b, f Histone H4 9606
283 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
284 6FTX 2 B, F Histone H4 8355
285 6FML 10 N, R Histone H4 9606
286 5Z3L 2 B, F Histone H4 8355
287 5Z3O 2 B, F Histone H4 8355
288 5Z3U 3 B, F Histone H4 8355
289 5Z3V 3 B, F Histone H4 8355
290 6C0W 2 B, F Histone H4 9606
291 6BUZ 2 B, F Histone H4 9606
292 6ESF 2 B, F Histone H4 8355
293 6ESG 2 B, F Histone H4 8355
294 6ESH 2 B, F Histone H4 8355
295 6ESI 2 B, F Histone H4 8355
296 5O9G 2 B, F Histone H4 8355
297 5X0X 2 B, F Histone H4 8355
298 5X0Y 2 B, F Histone H4 8355
299 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
300 3C9K 4 D, H Histone H4 9031