6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3509
95 % 8 14 3182
90 % 9 16 2815
70 % 8 11 4460
50 % 221 299 73
40 % 221 299 96
30 % 221 299 95
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 200 279 20
95 % 222 304 18
90 % 229 313 20
70 % 230 312 28
50 % 230 312 66
40 % 230 312 90
30 % 230 312 92
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 9424
95 % 194 278 34
90 % 181 255 49
70 % 194 273 53
50 % 207 286 81
40 % 207 286 103
30 % 207 286 100
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 1669
95 % 153 189 80
90 % 197 274 43
70 % 205 285 49
50 % 210 292 76
40 % 210 292 99
30 % 210 292 98
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 37661
95 % 1 3 30006
90 % 1 3 28874
70 % 1 3 26087
50 % 1 3 22855
40 % 1 3 21265
30 % 1 3 19051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 6JOU 2 B, F Histone H4 9606
18 1HQ3 4 D, H HISTONE H4-VI 9031
19 5BNX 2 B Histone H4 9606
20 3UTA 2 B, F Histone H4 8355
21 6KVD 3 B, F Histone H4 9606
22 5X7X 2 B, F Histone H4 9606
23 5B31 2 B, F Histone H4 9606
24 5B1L 2 B, F Histone H4 10090
25 6K1K 2 B, F Histone H4 9606
26 3UTB 2 B, F Histone H4 8355
27 1M19 3 B, F Histone H4 8355
28 5AVB 2 B, F Histone H4 9606
29 5AVC 2 B, F Histone H4 9606
30 5AV5 2 B, F Histone H4 9606
31 3C1B 2 B, F Histone H4 8355
32 5B1M 2 B, F Histone H4 10090
33 5JA4 2 B Histone H4 9606
34 5OMX 4 B, F Histone H4 8355
35 6JR1 2 B, F Histone H4 9606
36 5Z30 2 B, F Histone H4 9606
37 5JRG 2 B, F Histone H4 9606
38 3UT9 2 B, F Histone H4 8355
39 5B32 2 B, F Histone H4 9606
40 3R45 2 B Histone H4 9606
41 4WU8 4 B, F Histone H4 8355
42 3MGR 2 B, F Histone H4 8355
43 1F66 3 B, F HISTONE H4 10090
44 3AZG 2 B, F Histone H4 9606
45 1M18 3 B, F Histone H4 8355
46 5B2J 2 B, F Histone H4 9606
47 1P3L 3 B, F Histone H4 8355
48 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
49 5B0Y 2 B, F Histone H4 9606
50 6JR0 2 B, F Histone H4 9606
51 2CV5 3 B, F Histone H4 9606
52 5CP6 4 B, F Histone H4 8355
53 5ZBX 2 B, F Histone H4 9606
54 5XF6 2 B, F Histone H4 8355
55 3MGP 2 B, F Histone H4 8355
56 3MVD 2 B, F Histone H4 8355
57 4J8U 2 B, F Histone H4 8355
58 4WU9 2 B, F Histone H4 8355
59 3REH 2 B, F Histone H4 8355
60 5Z23 2 B, F Histone H4 9606
61 3NQU 2 B Histone H4 9606
62 5BNV 2 B, E Histone H4 9606
63 3AFA 2 B, F Histone H4 9606
64 5E5A 3 B, F Histone H4 8355
65 3REJ 2 B, F Histone H4 8355
66 3AZF 2 B, F Histone H4 9606
67 5GTC 2 B, F Histone H4 9606
68 3AV1 2 B, F Histone H4 9606
69 1M1A 3 B, F Histone H4 8355
70 5CPK 2 B, F Histone H4 9606
71 5AY8 2 B, F Histone H4 9606
72 3MNN 2 B, F Histone H4 8355
73 5BO0 2 B Histone H4 9606
74 4J8W 2 B, F Histone H4 8355
75 1P34 3 B, F Histone H4 8355
76 5XF3 2 B, F Histone H4 9606
77 3X1V 3 B, F Histone H4 9606
78 5ONG 4 B, F Histone H4 8355
79 5ONW 4 B, F Histone H4 8355
80 5DNM 2 B, F Histone H4 8355
81 4HGA 3 C Histone H4 9606
82 6K1I 2 B, F Histone H4 9606
83 3MGQ 2 B, F Histone H4 8355
84 3WTP 2 B, F Histone H4 9606
85 3X1T 3 B, F Histone H4 9606
86 2NZD 4 B, F Histone H4 8355
87 3A6N 2 B, F Histone H4 9606
88 5DNN 2 B, F Histone H4 8355
89 5GT3 2 B, F Histone H4 9606
90 5GT0 2 B, F Histone H4 9606
91 3LJA 2 B, F Histone H4 8355
92 3TU4 2 B, F Histone H4 8355
93 4Z2M 3 H, J Histone H4 9606
94 1KX4 3 B, F histone H4 8355
95 1P3M 3 B, F Histone H4 8355
96 4J8V 2 B, F Histone H4 8355
97 5B33 2 B, F Histone H4 9606
98 3X1S 2 B, F Histone H4 9606
99 3LZ0 2 B, F Histone H4 8355
100 1P3K 3 B, F Histone H4 8355
101 5B2I 2 B, F Histone H4 9606
102 1P3A 3 B, F Histone H4 8355
103 3LZ1 2 B, F Histone H4 8355
104 2IO5 3 C Histone H4 8355
105 5GXQ 2 B, F Histone H4 9606
106 2F8N 3 B, F Histone H4 8355
107 4Z5T 2 B, F Histone H4 9606
108 1U35 3 B, F Hist1h4i protein 10090
109 5XM0 2 B, F Histone H4 10090
110 3AV2 2 B, F Histone H4 9606
111 3AYW 2 B, F Histone H4 9606
112 5XF5 2 B, F Histone H4 9606
113 3REK 2 B, F Histone H4 8355
114 4KGC 2 B, F Histone H4 8355
115 1ZLA 3 B, F Histone H4 8355
116 5GSU 2 B, F Histone H4 9606
117 5XF4 2 B, F Histone H4 9606
118 3REL 2 B, F Histone H4 8355
119 5GSE 2 B, F, L, P Histone H4 9606
120 3REI 2 B, F Histone H4 8355
121 3WKJ 2 B, F Histone H4 9606
122 4J8X 2 B, F Histone H4 8355
123 3LEL 2 B, F, L, P Histone H4 8355
124 3KUY 2 B, F Histone H4 8355
125 4R8P 2 B, F Histone H4 8355
126 3X1U 3 B, F Histone H4 9606
127 3MGS 2 B, F Histone H4 8355
128 3WA9 2 B, F Histone H4 9606
129 3C1C 2 B, F Histone H4 8355
130 3AZH 2 B, F Histone H4 9606
131 3WAA 2 B, F Histone H4 9606
132 5CPI 2 B, F Histone H4 9606
133 3AZE 2 B, F Histone H4 9606
134 3W96 2 B, F Histone H4 9606
135 6OM3 2 B, F, N, R Histone H4 8355
136 5XM1 2 B, F Histone H4 10090
137 6K1J 2 B, F Histone H4 9606
138 5CPJ 2 B, F Histone H4 9606
139 5B24 2 B, F Histone H4 9606
140 5BS7 2 C, D Histone H4 8355
141 5C3I 3 C, G, K, O, S, W Histone H4 9606
142 4LD9 2 B, F Histone H4 8355
143 3O62 2 B, F Histone H4 8355
144 6KXV 2 B, F Histone H4 9606
145 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
146 5KDM 2 B Histone H4 9606
147 3W97 2 B, F Histone H4 9606
148 4YM5 2 B, F Histone H4 9606
149 4YM6 2 B, F Histone H4 9606
150 2FJ7 4 B, F Histone H4 8355
151 3W98 2 B, F Histone H4 9606
152 4ZUX 2 B, F, L, P Histone H4 8355
153 3AN2 2 B, F Histone H4 9606
154 5BSA 2 C, D Histone H4 8355
155 6VYP 2 B, F, b, f Histone H4 8355
156 3B6F 4 B, F Histone H4 8355
157 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
158 3B6G 4 B, F Histone H4 8355
159 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
160 3KXB 2 B, F Histone H4 8355
161 5HQ2 2 B Histone H4 8355
162 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
163 5OXV 4 B, F, L, P Histone H4 8355
164 1ZBB 4 B, F, b, f Histone H4 8355
165 7JO9 2 B, F Histone H4 9606
166 7JOA 2 B, F Histone H4 9606
167 6XJD 2 B, F Histone H4 9606
168 6X59 2 B, F Histone H4 9606
169 6X5A 2 B, F Histone H4 9606
170 6X0N 2 B, F, b, f Histone H4 8355
171 6WZ5 2 B, F Histone H4 8355
172 6WZ9 2 B, F Histone H4 8355
173 7C0M 2 B, F, b, f Histone H4 9606
174 6YOV 6 F Histone H4 9606
175 6LTJ 2 B, F Histone H4 8355
176 6VEN 2 B, F Histone H4 8355
177 6V92 24 b, f Histone H4 9606
178 6TEM 2 B, F Histone H4 8355
179 6TDA 2 B, F Histone H4 8355
180 6UXW 2 S, W Histone H4 8355
181 6T9L 2 B, F Histone H4 8355
182 6T90 2 B, F Histone H4 9606
183 6T93 2 B, F Histone H4 9606
184 6T79 2 B, F Histone H4 9606
185 6T7A 2 B, F Histone H4 9606
186 6T7B 2 B, F Histone H4 9606
187 6T7C 2 B, F Histone H4 9606
188 6T7D 2 B, F Histone H4 9606
189 6UPK 2 B, F Histone H4 9606
190 6UPL 2 B, F Histone H4 9606
191 6L49 2 B, F, L, P, T, X Histone H4 9606
192 6L4A 2 B, F, L, P, T, X Histone H4 9606
193 6UGM 2 B, F Histone H4 8355
194 6UH5 2 B, F Histone H4 8355
195 6KW4 2 B, R Histone H4 8355
196 6KW5 13 S, W Histone H4 8355
197 6KW3 1 B, R Histone H4 8355
198 6SEG 2 B, F Histone H4 9606
199 6SE0 2 B, F Histone H4 9606
200 6SE6 2 B, F Histone H4 9606
201 6SEE 2 B, F Histone H4 9606
202 6SEF 2 B, F Histone H4 9606
203 6PX1 2 B, F Histone H4 8355
204 6PX3 2 B, F Histone H4 8355
205 6PWV 5 H, L Histone H4 8355
206 6PWW 5 H, L Histone H4 8355
207 6PWX 3 H, L Histone H4 8355
208 6KIU 2 B, F Histone H4 8355
209 6KIV 2 B, F Histone H4 8355
210 6KIW 2 B, F Histone H4 8355
211 6KIX 2 B, F Histone H4 8355
212 6KIZ 2 B, F Histone H4 8355
213 6S01 2 B, F Histone H4 8355
214 6RYU 2 B, F Histone H4 8355
215 6PA7 2 B, F Histone H4 8355
216 6RYR 2 B, F Histone H4 8355
217 6K1P 2 B, F Histone H4 8355
218 6RNY 2 B, F Histone H4 9606
219 6JYL 2 B, F Histone H4 8355
220 6R8Y 2 B Histone H4 9606
221 6R8Y 5 F Histone H4 9606
222 6R8Z 2 B, F Histone H4 9606
223 6R90 2 B, F Histone H4 9606
224 6R91 2 B, F Histone H4 9606
225 6R92 5 B, F Histone H4 9606
226 6R93 4 B, F Histone H4 9606
227 6R94 4 B, F Histone H4 9606
228 6R1U 2 B, F Histone H4 8355
229 6R25 5 B, F H4 8355
230 6O96 2 B, F Histone H4 8355
231 6R0C 2 B, F Histone H4 9606
232 6O22 5 F Histone H4 8355
233 6O1D 2 B, F Histone H4 9606
234 6NZO 2 B, F Histone H4 8355
235 6J99 2 B, F Histone H4 8355
236 6NQA 3 B, F Histone H4 8355
237 6NOG 2 B, F Histone H4 8355
238 6NN6 2 B, F Histone H4 8355
239 6J4W 20 b, f Histone H4 9606
240 6J4X 20 b, f Histone H4 9606
241 6J4Y 20 b, f Histone H4 9606
242 6J4Z 19 b, f Histone H4 9606
243 6J50 19 b, f Histone H4 9606
244 6J51 20 b, f Histone H4 9606
245 6NJ9 1 B, F Histone H4 8355
246 6NE3 2 B, F Histone H4 8355
247 6I84 5 O, U Histone H4 8355
248 6IRO 3 B, F Histone H4 8355
249 6IR9 20 b, f Histone H4 9606
250 6INQ 17 b, f Histone H4 9606
251 6MUO 2 B, F Histone H4 9606
252 6MUP 2 B, F Histone H4 9606
253 6HTS 6 J, N Histone H4 9606
254 6E0C 2 B, F Histone H4 9606
255 6E0P 2 B, F Histone H4 9606
256 6A5O 17 b, f Histone H4 9606
257 6A5P 17 b, f Histone H4 9606
258 6A5R 17 b, f Histone H4 9606
259 6A5T 17 b, f Histone H4 9606
260 6A5U 17 b, f Histone H4 9606
261 6A5L 17 b, f Histone H4 9606
262 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
263 6FTX 2 B, F Histone H4 8355
264 6FML 10 N, R Histone H4 9606
265 5Z3L 2 B, F Histone H4 8355
266 5Z3O 2 B, F Histone H4 8355
267 5Z3U 3 B, F Histone H4 8355
268 5Z3V 3 B, F Histone H4 8355
269 6C0W 2 B, F Histone H4 9606
270 6BUZ 2 B, F Histone H4 9606
271 6ESF 2 B, F Histone H4 8355
272 6ESG 2 B, F Histone H4 8355
273 6ESH 2 B, F Histone H4 8355
274 6ESI 2 B, F Histone H4 8355
275 5O9G 2 B, F Histone H4 8355
276 5X0X 2 B, F Histone H4 8355
277 5X0Y 2 B, F Histone H4 8355
278 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
279 3C9K 4 D, H Histone H4 9031