Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3552
95 % 7 13 3104
90 % 8 15 2749
70 % 7 10 4419
50 % 185 257 87
40 % 185 257 104
30 % 185 257 103
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 239 37
95 % 185 261 34
90 % 192 270 37
70 % 193 269 44
50 % 193 269 79
40 % 193 269 98
30 % 193 269 97
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8563
95 % 163 241 52
90 % 156 224 70
70 % 159 230 74
50 % 159 230 99
40 % 159 230 118
30 % 159 230 119
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2803
95 % 128 164 110
90 % 162 233 67
70 % 170 244 68
50 % 175 251 91
40 % 175 251 107
30 % 175 251 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33343
95 % 1 3 27668
90 % 1 3 26682
70 % 1 3 24235
50 % 1 3 23010
40 % 1 3 21091
30 % 1 3 18889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 5JA4 2 B Histone H4 9606
31 5OMX 4 B, F Histone H4 8355
32 6JR1 2 B, F Histone H4 9606
33 5Z30 2 B, F Histone H4 9606
34 5JRG 2 B, F Histone H4 9606
35 3UT9 2 B, F Histone H4 8355
36 5B32 2 B, F Histone H4 9606
37 3R45 2 B Histone H4 9606
38 4WU8 4 B, F Histone H4 8355
39 3MGR 2 B, F Histone H4 8355
40 1F66 3 B, F HISTONE H4 10090
41 3AZG 2 B, F Histone H4 9606
42 1M18 3 B, F Histone H4 8355
43 5B2J 2 B, F Histone H4 9606
44 1P3L 3 B, F Histone H4 8355
45 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
46 5B0Y 2 B, F Histone H4 9606
47 6JR0 2 B, F Histone H4 9606
48 2CV5 3 B, F Histone H4 9606
49 5CP6 4 B, F Histone H4 8355
50 5ZBX 2 B, F Histone H4 9606
51 5XF6 2 B, F Histone H4 8355
52 3MGP 2 B, F Histone H4 8355
53 3MVD 2 B, F Histone H4 8355
54 4J8U 2 B, F Histone H4 8355
55 4WU9 2 B, F Histone H4 8355
56 3REH 2 B, F Histone H4 8355
57 5Z23 2 B, F Histone H4 9606
58 3NQU 2 B Histone H4 9606
59 5BNV 2 B, E Histone H4 9606
60 3AFA 2 B, F Histone H4 9606
61 5E5A 3 B, F Histone H4 8355
62 3REJ 2 B, F Histone H4 8355
63 3AZF 2 B, F Histone H4 9606
64 5GTC 2 B, F Histone H4 9606
65 3AV1 2 B, F Histone H4 9606
66 1M1A 3 B, F Histone H4 8355
67 5CPK 2 B, F Histone H4 9606
68 5AY8 2 B, F Histone H4 9606
69 3MNN 2 B, F Histone H4 8355
70 5BO0 2 B Histone H4 9606
71 4J8W 2 B, F Histone H4 8355
72 1P34 3 B, F Histone H4 8355
73 5XF3 2 B, F Histone H4 9606
74 3X1V 3 B, F Histone H4 9606
75 5ONG 4 B, F Histone H4 8355
76 5ONW 4 B, F Histone H4 8355
77 5DNM 2 B, F Histone H4 8355
78 4HGA 3 C Histone H4 9606
79 3MGQ 2 B, F Histone H4 8355
80 3WTP 2 B, F Histone H4 9606
81 3X1T 3 B, F Histone H4 9606
82 2NZD 4 B, F Histone H4 8355
83 3A6N 2 B, F Histone H4 9606
84 5DNN 2 B, F Histone H4 8355
85 5GT3 2 B, F Histone H4 9606
86 5GT0 2 B, F Histone H4 9606
87 3LJA 2 B, F Histone H4 8355
88 3TU4 2 B, F Histone H4 8355
89 4Z2M 3 H, J Histone H4 9606
90 1KX4 3 B, F histone H4 8355
91 1P3M 3 B, F Histone H4 8355
92 4J8V 2 B, F Histone H4 8355
93 5B33 2 B, F Histone H4 9606
94 3X1S 2 B, F Histone H4 9606
95 3LZ0 2 B, F Histone H4 8355
96 1P3K 3 B, F Histone H4 8355
97 5B2I 2 B, F Histone H4 9606
98 1P3A 3 B, F Histone H4 8355
99 3LZ1 2 B, F Histone H4 8355
100 2IO5 3 C Histone H4 8355
101 5GXQ 2 B, F Histone H4 9606
102 2F8N 3 B, F Histone H4 8355
103 4Z5T 2 B, F Histone H4 9606
104 1U35 3 B, F Hist1h4i protein 10090
105 5XM0 2 B, F Histone H4 10090
106 3AV2 2 B, F Histone H4 9606
107 3AYW 2 B, F Histone H4 9606
108 5XF5 2 B, F Histone H4 9606
109 3REK 2 B, F Histone H4 8355
110 4KGC 2 B, F Histone H4 8355
111 1ZLA 3 B, F Histone H4 8355
112 5GSU 2 B, F Histone H4 9606
113 5XF4 2 B, F Histone H4 9606
114 3REL 2 B, F Histone H4 8355
115 5GSE 2 B, F, L, P Histone H4 9606
116 3REI 2 B, F Histone H4 8355
117 3WKJ 2 B, F Histone H4 9606
118 4J8X 2 B, F Histone H4 8355
119 3LEL 2 B, F, L, P Histone H4 8355
120 3KUY 2 B, F Histone H4 8355
121 4R8P 2 B, F Histone H4 8355
122 3X1U 3 B, F Histone H4 9606
123 3MGS 2 B, F Histone H4 8355
124 3WA9 2 B, F Histone H4 9606
125 3C1C 2 B, F Histone H4 8355
126 3AZH 2 B, F Histone H4 9606
127 3WAA 2 B, F Histone H4 9606
128 5CPI 2 B, F Histone H4 9606
129 3AZE 2 B, F Histone H4 9606
130 3W96 2 B, F Histone H4 9606
131 6OM3 2 B, F, N, R Histone H4 8355
132 5XM1 2 B, F Histone H4 10090
133 5CPJ 2 B, F Histone H4 9606
134 5B24 2 B, F Histone H4 9606
135 5BS7 2 C, D Histone H4 8355
136 5C3I 3 C, G, K, O, S, W Histone H4 9606
137 4LD9 2 B, F Histone H4 8355
138 3O62 2 B, F Histone H4 8355
139 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
140 5KDM 2 B Histone H4 9606
141 3W97 2 B, F Histone H4 9606
142 4YM5 2 B, F Histone H4 9606
143 4YM6 2 B, F Histone H4 9606
144 2FJ7 4 B, F Histone H4 8355
145 3W98 2 B, F Histone H4 9606
146 4ZUX 2 B, F, L, P Histone H4 8355
147 3AN2 2 B, F Histone H4 9606
148 5BSA 2 C, D Histone H4 8355
149 3B6F 4 B, F Histone H4 8355
150 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
151 3B6G 4 B, F Histone H4 8355
152 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
153 3KXB 2 B, F Histone H4 8355
154 5HQ2 2 B Histone H4 8355
155 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
156 5OXV 4 B, F, L, P Histone H4 8355
157 1ZBB 4 B, F, b, f Histone H4 8355
158 6L49 2 B, F, L, P, T, X Histone H4 9606
159 6L4A 2 B, F, L, P, T, X Histone H4 9606
160 6UGM 2 B, F Histone H4 8355
161 6UH5 2 B, F Histone H4 8355
162 6KW4 2 B, R Histone H4 8355
163 6KW3 1 B, R Histone H4 8355
164 6SEG 2 B, F Histone H4 9606
165 6SE0 2 B, F Histone H4 9606
166 6SE6 2 B, F Histone H4 9606
167 6SEE 2 B, F Histone H4 9606
168 6SEF 2 B, F Histone H4 9606
169 6PX1 2 B, F Histone H4 8355
170 6PX3 2 B, F Histone H4 8355
171 6KIU 2 B, F Histone H4 8355
172 6KIV 2 B, F Histone H4 8355
173 6KIW 2 B, F Histone H4 8355
174 6KIX 2 B, F Histone H4 8355
175 6KIZ 2 B, F Histone H4 8355
176 6K1P 2 B, F Histone H4 8355
177 6RNY 2 B, F Histone H4 9606
178 6JYL 2 B, F Histone H4 8355
179 6R8Y 2 B Histone H4 9606
180 6R8Y 5 F Histone H4 9606
181 6R8Z 2 B, F Histone H4 9606
182 6R90 2 B, F Histone H4 9606
183 6R91 2 B, F Histone H4 9606
184 6R92 5 B, F Histone H4 9606
185 6R93 4 B, F Histone H4 9606
186 6R94 4 B, F Histone H4 9606
187 6R1U 2 B, F Histone H4 8355
188 6R25 5 B, F H4 8355
189 6O96 2 B, F Histone H4 8355
190 6R0C 2 B, F Histone H4 9606
191 6O22 5 F Histone H4 8355
192 6O1D 2 B, F Histone H4 9606
193 6NZO 2 B, F Histone H4 8355
194 6J99 2 B, F Histone H4 8355
195 6NQA 3 B, F Histone H4 8355
196 6NOG 2 B, F Histone H4 8355
197 6NN6 2 B, F Histone H4 8355
198 6J4W 20 b, f Histone H4 9606
199 6J4X 20 b, f Histone H4 9606
200 6J4Y 20 b, f Histone H4 9606
201 6J4Z 19 b, f Histone H4 9606
202 6J50 19 b, f Histone H4 9606
203 6J51 20 b, f Histone H4 9606
204 6NJ9 1 B, F Histone H4 8355
205 6NE3 2 B, F Histone H4 8355
206 6I84 5 O, U Histone H4 8355
207 6IRO 3 B, F Histone H4 8355
208 6IR9 20 b, f Histone H4 9606
209 6INQ 17 b, f Histone H4 9606
210 6MUO 2 B, F Histone H4 9606
211 6MUP 2 B, F Histone H4 9606
212 6HTS 6 J, N Histone H4 9606
213 6E0C 2 B, F Histone H4 9606
214 6E0P 2 B, F Histone H4 9606
215 6A5O 17 b, f Histone H4 9606
216 6A5P 17 b, f Histone H4 9606
217 6A5R 17 b, f Histone H4 9606
218 6A5T 17 b, f Histone H4 9606
219 6A5U 17 b, f Histone H4 9606
220 6A5L 17 b, f Histone H4 9606
221 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
222 6FTX 2 B, F Histone H4 8355
223 6FML 10 N, R Histone H4 9606
224 5Z3L 2 B, F Histone H4 8355
225 5Z3O 2 B, F Histone H4 8355
226 5Z3T 3 B, F Histone H4 8355
227 5Z3U 3 B, F Histone H4 8355
228 5Z3V 3 B, F Histone H4 8355
229 6C0W 2 B, F Histone H4 9606
230 6BUZ 2 B, F Histone H4 9606
231 6ESF 2 B, F Histone H4 8355
232 6ESG 2 B, F Histone H4 8355
233 6ESH 2 B, F Histone H4 8355
234 6ESI 2 B, F Histone H4 8355
235 5O9G 2 B, F Histone H4 8355
236 5X0X 2 B, F Histone H4 8355
237 5X0Y 2 B, F Histone H4 8355
238 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
239 3C9K 4 D, H Histone H4 9031