Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3812
95 % 7 13 3195
90 % 8 15 2808
70 % 7 10 4500
50 % 195 271 81
40 % 195 271 96
30 % 195 271 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 253 23
95 % 195 275 34
90 % 202 284 35
70 % 203 283 46
50 % 203 283 78
40 % 203 283 93
30 % 203 283 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8750
95 % 173 255 38
90 % 166 238 66
70 % 176 253 55
50 % 183 260 88
40 % 183 260 102
30 % 183 260 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2327
95 % 136 172 103
90 % 173 248 53
70 % 181 259 53
50 % 186 266 84
40 % 186 266 100
30 % 186 266 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36302
95 % 1 3 29273
90 % 1 3 28206
70 % 1 3 25478
50 % 1 3 22341
40 % 1 3 20457
30 % 1 3 18335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 6KVD 3 B, F Histone H4 9606
21 5X7X 2 B, F Histone H4 9606
22 5B31 2 B, F Histone H4 9606
23 5B1L 2 B, F Histone H4 10090
24 6K1K 2 B, F Histone H4 9606
25 3UTB 2 B, F Histone H4 8355
26 1M19 3 B, F Histone H4 8355
27 5AVB 2 B, F Histone H4 9606
28 5AVC 2 B, F Histone H4 9606
29 5AV5 2 B, F Histone H4 9606
30 3C1B 2 B, F Histone H4 8355
31 5B1M 2 B, F Histone H4 10090
32 2NQB 3 B, F Histone H4 7227
33 5JA4 2 B Histone H4 9606
34 5OMX 4 B, F Histone H4 8355
35 6JR1 2 B, F Histone H4 9606
36 5F99 2 B, F Histone H4 8355
37 5Z30 2 B, F Histone H4 9606
38 5JRG 2 B, F Histone H4 9606
39 3UT9 2 B, F Histone H4 8355
40 5B32 2 B, F Histone H4 9606
41 3R45 2 B Histone H4 9606
42 4WU8 4 B, F Histone H4 8355
43 1P3I 3 B, F Histone H4 8355
44 3MGR 2 B, F Histone H4 8355
45 1F66 3 B, F HISTONE H4 10090
46 3AZG 2 B, F Histone H4 9606
47 1M18 3 B, F Histone H4 8355
48 5B2J 2 B, F Histone H4 9606
49 2PYO 4 B, F Histone H4 7227
50 1P3L 3 B, F Histone H4 8355
51 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
52 5B0Y 2 B, F Histone H4 9606
53 6JR0 2 B, F Histone H4 9606
54 2CV5 3 B, F Histone H4 9606
55 5CP6 4 B, F Histone H4 8355
56 5ZBX 2 B, F Histone H4 9606
57 5XF6 2 B, F Histone H4 8355
58 3MGP 2 B, F Histone H4 8355
59 3MVD 2 B, F Histone H4 8355
60 4J8U 2 B, F Histone H4 8355
61 4WU9 2 B, F Histone H4 8355
62 2YFW 2 B, D, F, H HISTONE H4 28985
63 3REH 2 B, F Histone H4 8355
64 3AZL 2 B, F Histone H4 9606
65 5Z23 2 B, F Histone H4 9606
66 3NQU 2 B Histone H4 9606
67 5BNV 2 B, E Histone H4 9606
68 3AFA 2 B, F Histone H4 9606
69 5E5A 3 B, F Histone H4 8355
70 3REJ 2 B, F Histone H4 8355
71 3AZF 2 B, F Histone H4 9606
72 5GTC 2 B, F Histone H4 9606
73 1P3P 3 B, F Histone H4 8355
74 3AV1 2 B, F Histone H4 9606
75 1M1A 3 B, F Histone H4 8355
76 5CPK 2 B, F Histone H4 9606
77 5AY8 2 B, F Histone H4 9606
78 3MNN 2 B, F Histone H4 8355
79 5BO0 2 B Histone H4 9606
80 1P3G 3 B, F Histone H4 8355
81 4J8W 2 B, F Histone H4 8355
82 1P34 3 B, F Histone H4 8355
83 5XF3 2 B, F Histone H4 9606
84 3X1V 3 B, F Histone H4 9606
85 5ONG 4 B, F Histone H4 8355
86 5ONW 4 B, F Histone H4 8355
87 5DNM 2 B, F Histone H4 8355
88 4HGA 3 C Histone H4 9606
89 4UUZ 2 B HISTONE H4 7227
90 6K1I 2 B, F Histone H4 9606
91 3MGQ 2 B, F Histone H4 8355
92 3WTP 2 B, F Histone H4 9606
93 3X1T 3 B, F Histone H4 9606
94 2NZD 4 B, F Histone H4 8355
95 3A6N 2 B, F Histone H4 9606
96 5DNN 2 B, F Histone H4 8355
97 5GT3 2 B, F Histone H4 9606
98 5GT0 2 B, F Histone H4 9606
99 3LJA 2 B, F Histone H4 8355
100 3AZI 2 B, F Histone H4 9606
101 3TU4 2 B, F Histone H4 8355
102 1P3O 3 B, F Histone H4 8355
103 4Z2M 3 H, J Histone H4 9606
104 1KX4 3 B, F histone H4 8355
105 3AZN 2 B, F Histone H4 9606
106 1P3M 3 B, F Histone H4 8355
107 4J8V 2 B, F Histone H4 8355
108 5B33 2 B, F Histone H4 9606
109 3X1S 2 B, F Histone H4 9606
110 3LZ0 2 B, F Histone H4 8355
111 1P3F 3 B, F Histone H4 8355
112 1P3K 3 B, F Histone H4 8355
113 4XYI 2 B Histone H4 4897
114 5B2I 2 B, F Histone H4 9606
115 1P3A 3 B, F Histone H4 8355
116 3LZ1 2 B, F Histone H4 8355
117 2IO5 3 C Histone H4 8355
118 5GXQ 2 B, F Histone H4 9606
119 2F8N 3 B, F Histone H4 8355
120 4Z5T 2 B, F Histone H4 9606
121 1U35 3 B, F Hist1h4i protein 10090
122 5XM0 2 B, F Histone H4 10090
123 3AV2 2 B, F Histone H4 9606
124 3AYW 2 B, F Histone H4 9606
125 5XF5 2 B, F Histone H4 9606
126 3AZJ 2 B, F Histone H4 9606
127 3REK 2 B, F Histone H4 8355
128 4KGC 2 B, F Histone H4 8355
129 1ZLA 3 B, F Histone H4 8355
130 5GSU 2 B, F Histone H4 9606
131 5XF4 2 B, F Histone H4 9606
132 3REL 2 B, F Histone H4 8355
133 5GSE 2 B, F, L, P Histone H4 9606
134 3REI 2 B, F Histone H4 8355
135 1P3B 3 B, F Histone H4 8355
136 3WKJ 2 B, F Histone H4 9606
137 4KUD 2 B, F Histone H4 4932
138 3AZK 2 B, F Histone H4 9606
139 4J8X 2 B, F Histone H4 8355
140 3LEL 2 B, F, L, P Histone H4 8355
141 3KUY 2 B, F Histone H4 8355
142 4R8P 2 B, F Histone H4 8355
143 3AZM 2 B, F Histone H4 9606
144 3X1U 3 B, F Histone H4 9606
145 3MGS 2 B, F Histone H4 8355
146 3WA9 2 B, F Histone H4 9606
147 1ID3 3 B, F HISTONE H4 4932
148 3C1C 2 B, F Histone H4 8355
149 3AZH 2 B, F Histone H4 9606
150 5B40 2 B, F Histone H4 9606
151 3WAA 2 B, F Histone H4 9606
152 5CPI 2 B, F Histone H4 9606
153 4JJN 2 B, F Histone H4 4932
154 3W99 2 B, F Histone H4 UNP residues 17-103 9606
155 3AZE 2 B, F Histone H4 9606
156 3W96 2 B, F Histone H4 9606
157 6OM3 2 B, F, N, R Histone H4 8355
158 5XM1 2 B, F Histone H4 10090
159 6K1J 2 B, F Histone H4 9606
160 5CPJ 2 B, F Histone H4 9606
161 5B24 2 B, F Histone H4 9606
162 5BS7 2 C, D Histone H4 8355
163 5C3I 3 C, G, K, O, S, W Histone H4 9606
164 2HIO 4 D PROTEIN (HISTONE H4) 9031
165 4QLC 4 B, F Histone H4 7227
166 4LD9 2 B, F Histone H4 8355
167 5ZBB 4 D Histone H4 4932
168 3O62 2 B, F Histone H4 8355
169 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
170 5KDM 2 B Histone H4 9606
171 3W97 2 B, F Histone H4 9606
172 4YM5 2 B, F Histone H4 9606
173 5ZBA 4 D Histone H4 4932
174 4YM6 2 B, F Histone H4 9606
175 2FJ7 4 B, F Histone H4 8355
176 3W98 2 B, F Histone H4 9606
177 4ZUX 2 B, F, L, P Histone H4 8355
178 3AN2 2 B, F Histone H4 9606
179 5BSA 2 C, D Histone H4 8355
180 3B6F 4 B, F Histone H4 8355
181 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
182 3B6G 4 B, F Histone H4 8355
183 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
184 3KXB 2 B, F Histone H4 8355
185 5HQ2 2 B Histone H4 8355
186 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
187 5OXV 4 B, F, L, P Histone H4 8355
188 1ZBB 4 B, F, b, f Histone H4 8355
189 6LTJ 2 B, F Histone H4 8355
190 6VEN 2 B, F Histone H4 8355
191 6V92 24 b, f Histone H4 9606
192 6T9L 2 B, F Histone H4 8355
193 6UPK 2 B, F Histone H4 9606
194 6UPL 2 B, F Histone H4 9606
195 6L49 2 B, F, L, P, T, X Histone H4 9606
196 6L4A 2 B, F, L, P, T, X Histone H4 9606
197 6UGM 2 B, F Histone H4 8355
198 6UH5 2 B, F Histone H4 8355
199 6KW4 2 B, R Histone H4 8355
200 6KW3 1 B, R Histone H4 8355
201 6SEG 2 B, F Histone H4 9606
202 6SE0 2 B, F Histone H4 9606
203 6SE6 2 B, F Histone H4 9606
204 6SEE 2 B, F Histone H4 9606
205 6SEF 2 B, F Histone H4 9606
206 6PX1 2 B, F Histone H4 8355
207 6PX3 2 B, F Histone H4 8355
208 6PWV 5 H, L Histone H4 8355
209 6PWW 5 H, L Histone H4 8355
210 6PWX 3 H, L Histone H4 8355
211 6PWE 2 B, F Histone H4 7227
212 6PWF 2 B, F Histone H4 7227
213 6KIU 2 B, F Histone H4 8355
214 6KIV 2 B, F Histone H4 8355
215 6KIW 2 B, F Histone H4 8355
216 6KIX 2 B, F Histone H4 8355
217 6KIZ 2 B, F Histone H4 8355
218 6S01 2 B, F Histone H4 8355
219 6K1P 2 B, F Histone H4 8355
220 6RNY 2 B, F Histone H4 9606
221 6JYL 2 B, F Histone H4 8355
222 6R8Y 2 B Histone H4 9606
223 6R8Y 5 F Histone H4 9606
224 6R8Z 2 B, F Histone H4 9606
225 6R90 2 B, F Histone H4 9606
226 6R91 2 B, F Histone H4 9606
227 6R92 5 B, F Histone H4 9606
228 6R93 4 B, F Histone H4 9606
229 6R94 4 B, F Histone H4 9606
230 6R1U 2 B, F Histone H4 8355
231 6R25 5 B, F H4 8355
232 6O96 2 B, F Histone H4 8355
233 6R0C 2 B, F Histone H4 9606
234 6O22 5 F Histone H4 8355
235 6O1D 2 B, F Histone H4 9606
236 6NZO 2 B, F Histone H4 8355
237 6J99 2 B, F Histone H4 8355
238 6NQA 3 B, F Histone H4 8355
239 6NOG 2 B, F Histone H4 8355
240 6NN6 2 B, F Histone H4 8355
241 6J4W 20 b, f Histone H4 9606
242 6J4X 20 b, f Histone H4 9606
243 6J4Y 20 b, f Histone H4 9606
244 6J4Z 19 b, f Histone H4 9606
245 6J50 19 b, f Histone H4 9606
246 6J51 20 b, f Histone H4 9606
247 6NJ9 1 B, F Histone H4 8355
248 6NE3 2 B, F Histone H4 8355
249 6I84 5 O, U Histone H4 8355
250 6IRO 3 B, F Histone H4 8355
251 6IR9 20 b, f Histone H4 9606
252 6INQ 17 b, f Histone H4 9606
253 6HTS 6 J, N Histone H4 9606
254 6E0C 2 B, F Histone H4 9606
255 6E0P 2 B, F Histone H4 9606
256 6DZT 2 B, F Histone H4 7227
257 6A5O 17 b, f Histone H4 9606
258 6A5P 17 b, f Histone H4 9606
259 6A5R 17 b, f Histone H4 9606
260 6A5T 17 b, f Histone H4 9606
261 6A5U 17 b, f Histone H4 9606
262 6A5L 17 b, f Histone H4 9606
263 6GEN 3 C, D Histone H4 4932
264 6GEJ 3 C, D Histone H4 4932
265 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
266 6FTX 2 B, F Histone H4 8355
267 6FML 10 N, R Histone H4 9606
268 5Z3L 2 B, F Histone H4 8355
269 5Z3O 2 B, F Histone H4 8355
270 5Z3T 3 B, F Histone H4 8355
271 5Z3U 3 B, F Histone H4 8355
272 5Z3V 3 B, F Histone H4 8355
273 6C0W 2 B, F Histone H4 9606
274 6BUZ 2 B, F Histone H4 9606
275 6ESF 2 B, F Histone H4 8355
276 6ESG 2 B, F Histone H4 8355
277 6ESH 2 B, F Histone H4 8355
278 6ESI 2 B, F Histone H4 8355
279 5O9G 2 B, F Histone H4 8355
280 5X0X 2 B, F Histone H4 8355
281 5X0Y 2 B, F Histone H4 8355
282 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
283 3C9K 4 D, H Histone H4 9031