6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3842
95 % 8 14 3307
90 % 9 16 2922
70 % 8 11 4641
50 % 241 319 63
40 % 241 319 83
30 % 241 319 91
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 300 9
95 % 243 325 17
90 % 250 334 18
70 % 251 333 25
50 % 251 333 58
40 % 251 333 77
30 % 251 333 81
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6122
95 % 216 300 18
90 % 199 273 44
70 % 212 291 38
50 % 225 304 69
40 % 225 304 88
30 % 225 304 97
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1605
95 % 169 205 75
90 % 218 295 25
70 % 226 306 31
50 % 231 313 67
40 % 231 313 86
30 % 231 313 94
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36825
95 % 1 3 30394
90 % 1 3 29239
70 % 1 3 26344
50 % 1 3 25020
40 % 1 3 22794
30 % 1 3 18885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 6JOU 2 B, F Histone H4 9606
18 1HQ3 4 D, H HISTONE H4-VI 9031
19 5BNX 2 B Histone H4 9606
20 3UTA 2 B, F Histone H4 8355
21 6KVD 3 B, F Histone H4 9606
22 5X7X 2 B, F Histone H4 9606
23 5B31 2 B, F Histone H4 9606
24 5B1L 2 B, F Histone H4 10090
25 6K1K 2 B, F Histone H4 9606
26 3UTB 2 B, F Histone H4 8355
27 1M19 3 B, F Histone H4 8355
28 5AVB 2 B, F Histone H4 9606
29 5AVC 2 B, F Histone H4 9606
30 5AV5 2 B, F Histone H4 9606
31 3C1B 2 B, F Histone H4 8355
32 5B1M 2 B, F Histone H4 10090
33 2NQB 3 B, F Histone H4 7227
34 5JA4 2 B Histone H4 9606
35 5OMX 4 B, F Histone H4 8355
36 6JR1 2 B, F Histone H4 9606
37 5F99 2 B, F Histone H4 8355
38 5Z30 2 B, F Histone H4 9606
39 5JRG 2 B, F Histone H4 9606
40 3UT9 2 B, F Histone H4 8355
41 5B32 2 B, F Histone H4 9606
42 3R45 2 B Histone H4 9606
43 4WU8 4 B, F Histone H4 8355
44 1P3I 3 B, F Histone H4 8355
45 3MGR 2 B, F Histone H4 8355
46 1F66 3 B, F HISTONE H4 10090
47 3AZG 2 B, F Histone H4 9606
48 1M18 3 B, F Histone H4 8355
49 5B2J 2 B, F Histone H4 9606
50 6V2K 2 B, F Histone H4 9606
51 2PYO 4 B, F Histone H4 7227
52 1P3L 3 B, F Histone H4 8355
53 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
54 5B0Y 2 B, F Histone H4 9606
55 6JR0 2 B, F Histone H4 9606
56 2CV5 3 B, F Histone H4 9606
57 5CP6 4 B, F Histone H4 8355
58 5ZBX 2 B, F Histone H4 9606
59 5XF6 2 B, F Histone H4 8355
60 3MGP 2 B, F Histone H4 8355
61 3MVD 2 B, F Histone H4 8355
62 4J8U 2 B, F Histone H4 8355
63 4WU9 2 B, F Histone H4 8355
64 2YFW 2 B, D, F, H HISTONE H4 28985
65 3REH 2 B, F Histone H4 8355
66 3AZL 2 B, F Histone H4 9606
67 5Z23 2 B, F Histone H4 9606
68 3NQU 2 B Histone H4 9606
69 5BNV 2 B, E Histone H4 9606
70 3AFA 2 B, F Histone H4 9606
71 5E5A 3 B, F Histone H4 8355
72 3REJ 2 B, F Histone H4 8355
73 3AZF 2 B, F Histone H4 9606
74 5GTC 2 B, F Histone H4 9606
75 1P3P 3 B, F Histone H4 8355
76 3AV1 2 B, F Histone H4 9606
77 1M1A 3 B, F Histone H4 8355
78 5CPK 2 B, F Histone H4 9606
79 5AY8 2 B, F Histone H4 9606
80 3MNN 2 B, F Histone H4 8355
81 5BO0 2 B Histone H4 9606
82 1P3G 3 B, F Histone H4 8355
83 4J8W 2 B, F Histone H4 8355
84 1P34 3 B, F Histone H4 8355
85 5XF3 2 B, F Histone H4 9606
86 3X1V 3 B, F Histone H4 9606
87 5ONG 4 B, F Histone H4 8355
88 5ONW 4 B, F Histone H4 8355
89 5DNM 2 B, F Histone H4 8355
90 4HGA 3 C Histone H4 9606
91 4UUZ 2 B HISTONE H4 7227
92 6K1I 2 B, F Histone H4 9606
93 3MGQ 2 B, F Histone H4 8355
94 3WTP 2 B, F Histone H4 9606
95 3X1T 3 B, F Histone H4 9606
96 2NZD 4 B, F Histone H4 8355
97 3A6N 2 B, F Histone H4 9606
98 5DNN 2 B, F Histone H4 8355
99 5GT3 2 B, F Histone H4 9606
100 5GT0 2 B, F Histone H4 9606
101 3LJA 2 B, F Histone H4 8355
102 3AZI 2 B, F Histone H4 9606
103 3TU4 2 B, F Histone H4 8355
104 1P3O 3 B, F Histone H4 8355
105 4Z2M 3 H, J Histone H4 9606
106 1KX4 3 B, F histone H4 8355
107 3AZN 2 B, F Histone H4 9606
108 1P3M 3 B, F Histone H4 8355
109 4J8V 2 B, F Histone H4 8355
110 5B33 2 B, F Histone H4 9606
111 3X1S 2 B, F Histone H4 9606
112 3LZ0 2 B, F Histone H4 8355
113 1P3F 3 B, F Histone H4 8355
114 1P3K 3 B, F Histone H4 8355
115 4XYI 2 B Histone H4 4897
116 5B2I 2 B, F Histone H4 9606
117 1P3A 3 B, F Histone H4 8355
118 3LZ1 2 B, F Histone H4 8355
119 2IO5 3 C Histone H4 8355
120 5GXQ 2 B, F Histone H4 9606
121 2F8N 3 B, F Histone H4 8355
122 4Z5T 2 B, F Histone H4 9606
123 1U35 3 B, F Hist1h4i protein 10090
124 5XM0 2 B, F Histone H4 10090
125 3AV2 2 B, F Histone H4 9606
126 3AYW 2 B, F Histone H4 9606
127 5XF5 2 B, F Histone H4 9606
128 3AZJ 2 B, F Histone H4 9606
129 3REK 2 B, F Histone H4 8355
130 4KGC 2 B, F Histone H4 8355
131 1ZLA 3 B, F Histone H4 8355
132 5GSU 2 B, F Histone H4 9606
133 5XF4 2 B, F Histone H4 9606
134 3REL 2 B, F Histone H4 8355
135 5GSE 2 B, F, L, P Histone H4 9606
136 3REI 2 B, F Histone H4 8355
137 1P3B 3 B, F Histone H4 8355
138 3WKJ 2 B, F Histone H4 9606
139 4KUD 2 B, F Histone H4 4932
140 3AZK 2 B, F Histone H4 9606
141 4J8X 2 B, F Histone H4 8355
142 3LEL 2 B, F, L, P Histone H4 8355
143 3KUY 2 B, F Histone H4 8355
144 4R8P 2 B, F Histone H4 8355
145 3AZM 2 B, F Histone H4 9606
146 3X1U 3 B, F Histone H4 9606
147 3MGS 2 B, F Histone H4 8355
148 3WA9 2 B, F Histone H4 9606
149 1ID3 3 B, F HISTONE H4 4932
150 3C1C 2 B, F Histone H4 8355
151 3AZH 2 B, F Histone H4 9606
152 5B40 2 B, F Histone H4 9606
153 3WAA 2 B, F Histone H4 9606
154 5CPI 2 B, F Histone H4 9606
155 4JJN 2 B, F Histone H4 4932
156 3W99 2 B, F Histone H4 UNP residues 17-103 9606
157 3AZE 2 B, F Histone H4 9606
158 6LA8 2 B, F, L, P Histone H4 9606
159 3W96 2 B, F Histone H4 9606
160 6OM3 2 B, F, N, R Histone H4 8355
161 5XM1 2 B, F Histone H4 10090
162 6K1J 2 B, F Histone H4 9606
163 5CPJ 2 B, F Histone H4 9606
164 6LA9 2 B, F, L, P Histone H4 9606
165 5B24 2 B, F Histone H4 9606
166 5BS7 2 C, D Histone H4 8355
167 5C3I 3 C, G, K, O, S, W Histone H4 9606
168 2HIO 4 D PROTEIN (HISTONE H4) 9031
169 4QLC 4 B, F Histone H4 7227
170 4LD9 2 B, F Histone H4 8355
171 5ZBB 4 D Histone H4 4932
172 3O62 2 B, F Histone H4 8355
173 6M44 2 B, F, L, P Histone H4 9606
174 6KXV 2 B, F Histone H4 9606
175 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
176 5KDM 2 B Histone H4 9606
177 3W97 2 B, F Histone H4 9606
178 4YM5 2 B, F Histone H4 9606
179 5ZBA 4 D Histone H4 4932
180 4YM6 2 B, F Histone H4 9606
181 2FJ7 4 B, F Histone H4 8355
182 3W98 2 B, F Histone H4 9606
183 4ZUX 2 B, F, L, P Histone H4 8355
184 6XWT 2 B, D Histone H4 7227
185 6M3V 2 B, F, L, P Histone H4 9606
186 3AN2 2 B, F Histone H4 9606
187 5BSA 2 C, D Histone H4 8355
188 6VYP 2 B, F, b, f Histone H4 8355
189 3B6F 4 B, F Histone H4 8355
190 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
191 3B6G 4 B, F Histone H4 8355
192 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
193 3KXB 2 B, F Histone H4 8355
194 6XWS 2 B Histone H4 7227
195 5HQ2 2 B Histone H4 8355
196 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
197 5OXV 4 B, F, L, P Histone H4 8355
198 1ZBB 4 B, F, b, f Histone H4 8355
199 7K63 2 B, F Histone H4 9606
200 7K5X 2 B, F Histone H4 9606
201 7K5Y 2 B, F Histone H4 9606
202 7K60 2 B, F Histone H4 9606
203 7K61 2 B, F Histone H4 9606
204 7CRO 2 B, F Histone H4 8355
205 7CRP 2 B, F Histone H4 8355
206 7CRQ 2 B, F Histone H4 8355
207 7CRR 2 B, F Histone H4 8355
208 7A08 7 e, i Histone H4 9606
209 7JO9 2 B, F Histone H4 9606
210 7JOA 2 B, F Histone H4 9606
211 6XJD 2 B, F Histone H4 9606
212 6X59 2 B, F Histone H4 9606
213 6X5A 2 B, F Histone H4 9606
214 6X0N 2 B, F, b, f Histone H4 8355
215 6WZ5 2 B, F Histone H4 8355
216 6WZ9 2 B, F Histone H4 8355
217 7C0M 2 B, F, b, f Histone H4 9606
218 6YOV 2 B Histone H4 9606
219 6YOV 6 F Histone H4 9606
220 6M4H 4 B, F Histone H4 9606
221 6M4D 2 B, F Histone H4 9606
222 6M4G 4 B, F Histone H4 9606
223 6VZ4 2 B, F Histone H4 8355
224 6Y5D 2 B, F, N, R Histone H4 9606
225 6LTJ 2 B, F Histone H4 8355
226 6VEN 2 B, F Histone H4 8355
227 6V92 24 b, f Histone H4 9606
228 6TEM 2 B, F Histone H4 8355
229 6TDA 2 B, F Histone H4 8355
230 6UXW 2 S, W Histone H4 8355
231 6T9L 2 B, F Histone H4 8355
232 6USJ 4 B, F, L, P Histone H4 9606
233 6T90 2 B, F Histone H4 9606
234 6T93 2 B, F Histone H4 9606
235 6T79 2 B, F Histone H4 9606
236 6T7A 2 B, F Histone H4 9606
237 6T7B 2 B, F Histone H4 9606
238 6T7C 2 B, F Histone H4 9606
239 6T7D 2 B, F Histone H4 9606
240 6UPK 2 B, F Histone H4 9606
241 6UPL 2 B, F Histone H4 9606
242 6L49 2 B, F, L, P, T, X Histone H4 9606
243 6L4A 2 B, F, L, P, T, X Histone H4 9606
244 6UGM 2 B, F Histone H4 8355
245 6UH5 2 B, F Histone H4 8355
246 6KW4 2 B, R Histone H4 8355
247 6KW5 13 S, W Histone H4 8355
248 6KW3 1 B, R Histone H4 8355
249 6SEG 2 B, F Histone H4 9606
250 6SE0 2 B, F Histone H4 9606
251 6SE6 2 B, F Histone H4 9606
252 6SEE 2 B, F Histone H4 9606
253 6SEF 2 B, F Histone H4 9606
254 6PX1 2 B, F Histone H4 8355
255 6PX3 2 B, F Histone H4 8355
256 6PWV 5 H, L Histone H4 8355
257 6PWW 5 H, L Histone H4 8355
258 6PWX 3 H, L Histone H4 8355
259 6PWE 2 B, F Histone H4 7227
260 6PWF 2 B, F Histone H4 7227
261 6KIU 2 B, F Histone H4 8355
262 6KIV 2 B, F Histone H4 8355
263 6KIW 2 B, F Histone H4 8355
264 6KIX 2 B, F Histone H4 8355
265 6KIZ 2 B, F Histone H4 8355
266 6S01 2 B, F Histone H4 8355
267 6RYU 2 B, F Histone H4 8355
268 6PA7 2 B, F Histone H4 8355
269 6RYR 2 B, F Histone H4 8355
270 6K1P 2 B, F Histone H4 8355
271 6RNY 2 B, F Histone H4 9606
272 6JYL 2 B, F Histone H4 8355
273 6R8Y 2 B Histone H4 9606
274 6R8Y 5 F Histone H4 9606
275 6R8Z 2 B, F Histone H4 9606
276 6R90 2 B, F Histone H4 9606
277 6R91 2 B, F Histone H4 9606
278 6R92 5 B, F Histone H4 9606
279 6R93 4 B, F Histone H4 9606
280 6R94 4 B, F Histone H4 9606
281 6R1U 2 B, F Histone H4 8355
282 6R25 5 B, F H4 8355
283 6O96 2 B, F Histone H4 8355
284 6R0C 2 B, F Histone H4 9606
285 6O22 5 F Histone H4 8355
286 6O1D 2 B, F Histone H4 9606
287 6NZO 2 B, F Histone H4 8355
288 6J99 2 B, F Histone H4 8355
289 6NQA 3 B, F Histone H4 8355
290 6NOG 2 B, F Histone H4 8355
291 6NN6 2 B, F Histone H4 8355
292 6J4W 20 b, f Histone H4 9606
293 6J4X 20 b, f Histone H4 9606
294 6J4Y 20 b, f Histone H4 9606
295 6J4Z 19 b, f Histone H4 9606
296 6J50 19 b, f Histone H4 9606
297 6J51 20 b, f Histone H4 9606
298 6NJ9 1 B, F Histone H4 8355
299 6NE3 2 B, F Histone H4 8355
300 6I84 5 O, U Histone H4 8355
301 6IRO 3 B, F Histone H4 8355
302 6IR9 20 b, f Histone H4 9606
303 6INQ 17 b, f Histone H4 9606
304 6HTS 6 J, N Histone H4 9606
305 6E0C 2 B, F Histone H4 9606
306 6E0P 2 B, F Histone H4 9606
307 6DZT 2 B, F Histone H4 7227
308 6A5O 17 b, f Histone H4 9606
309 6A5P 17 b, f Histone H4 9606
310 6A5R 17 b, f Histone H4 9606
311 6A5T 17 b, f Histone H4 9606
312 6A5U 17 b, f Histone H4 9606
313 6A5L 17 b, f Histone H4 9606
314 6GEN 3 C, D Histone H4 4932
315 6GEJ 3 C, D Histone H4 4932
316 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
317 6FTX 2 B, F Histone H4 8355
318 6FML 10 N, R Histone H4 9606
319 5Z3L 2 B, F Histone H4 8355
320 5Z3O 2 B, F Histone H4 8355
321 5Z3U 3 B, F Histone H4 8355
322 5Z3V 3 B, F Histone H4 8355
323 6C0W 2 B, F Histone H4 9606
324 6BUZ 2 B, F Histone H4 9606
325 6ESF 2 B, F Histone H4 8355
326 6ESG 2 B, F Histone H4 8355
327 6ESH 2 B, F Histone H4 8355
328 6ESI 2 B, F Histone H4 8355
329 5O9G 2 B, F Histone H4 8355
330 5X0X 2 B, F Histone H4 8355
331 5X0Y 2 B, F Histone H4 8355
332 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
333 3C9K 4 D, H Histone H4 9031