Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3552
95 % 7 13 3104
90 % 8 15 2749
70 % 7 10 4419
50 % 185 257 87
40 % 185 257 104
30 % 185 257 103
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 239 37
95 % 185 261 34
90 % 192 270 37
70 % 193 269 44
50 % 193 269 79
40 % 193 269 98
30 % 193 269 97
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8563
95 % 163 241 52
90 % 156 224 70
70 % 159 230 74
50 % 159 230 99
40 % 159 230 118
30 % 159 230 119
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2803
95 % 128 164 110
90 % 162 233 67
70 % 170 244 68
50 % 175 251 91
40 % 175 251 107
30 % 175 251 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33343
95 % 1 3 27668
90 % 1 3 26682
70 % 1 3 24235
50 % 1 3 23010
40 % 1 3 21091
30 % 1 3 18889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 2NQB 3 B, F Histone H4 7227
31 5JA4 2 B Histone H4 9606
32 5OMX 4 B, F Histone H4 8355
33 6JR1 2 B, F Histone H4 9606
34 5F99 2 B, F Histone H4 8355
35 5Z30 2 B, F Histone H4 9606
36 5JRG 2 B, F Histone H4 9606
37 3UT9 2 B, F Histone H4 8355
38 5B32 2 B, F Histone H4 9606
39 3R45 2 B Histone H4 9606
40 4WU8 4 B, F Histone H4 8355
41 1P3I 3 B, F Histone H4 8355
42 3MGR 2 B, F Histone H4 8355
43 1F66 3 B, F HISTONE H4 10090
44 3AZG 2 B, F Histone H4 9606
45 1M18 3 B, F Histone H4 8355
46 5B2J 2 B, F Histone H4 9606
47 2PYO 4 B, F Histone H4 7227
48 1P3L 3 B, F Histone H4 8355
49 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
50 5B0Y 2 B, F Histone H4 9606
51 6JR0 2 B, F Histone H4 9606
52 2CV5 3 B, F Histone H4 9606
53 5CP6 4 B, F Histone H4 8355
54 5ZBX 2 B, F Histone H4 9606
55 5XF6 2 B, F Histone H4 8355
56 3MGP 2 B, F Histone H4 8355
57 3MVD 2 B, F Histone H4 8355
58 4J8U 2 B, F Histone H4 8355
59 4WU9 2 B, F Histone H4 8355
60 3REH 2 B, F Histone H4 8355
61 3AZL 2 B, F Histone H4 9606
62 5Z23 2 B, F Histone H4 9606
63 3NQU 2 B Histone H4 9606
64 5BNV 2 B, E Histone H4 9606
65 3AFA 2 B, F Histone H4 9606
66 5E5A 3 B, F Histone H4 8355
67 3REJ 2 B, F Histone H4 8355
68 3AZF 2 B, F Histone H4 9606
69 5GTC 2 B, F Histone H4 9606
70 1P3P 3 B, F Histone H4 8355
71 3AV1 2 B, F Histone H4 9606
72 1M1A 3 B, F Histone H4 8355
73 5CPK 2 B, F Histone H4 9606
74 5AY8 2 B, F Histone H4 9606
75 3MNN 2 B, F Histone H4 8355
76 5BO0 2 B Histone H4 9606
77 1P3G 3 B, F Histone H4 8355
78 4J8W 2 B, F Histone H4 8355
79 1P34 3 B, F Histone H4 8355
80 5XF3 2 B, F Histone H4 9606
81 3X1V 3 B, F Histone H4 9606
82 5ONG 4 B, F Histone H4 8355
83 5ONW 4 B, F Histone H4 8355
84 5DNM 2 B, F Histone H4 8355
85 4HGA 3 C Histone H4 9606
86 4UUZ 2 B HISTONE H4 7227
87 3MGQ 2 B, F Histone H4 8355
88 3WTP 2 B, F Histone H4 9606
89 3X1T 3 B, F Histone H4 9606
90 2NZD 4 B, F Histone H4 8355
91 3A6N 2 B, F Histone H4 9606
92 5DNN 2 B, F Histone H4 8355
93 5GT3 2 B, F Histone H4 9606
94 5GT0 2 B, F Histone H4 9606
95 3LJA 2 B, F Histone H4 8355
96 3AZI 2 B, F Histone H4 9606
97 3TU4 2 B, F Histone H4 8355
98 1P3O 3 B, F Histone H4 8355
99 4Z2M 3 H, J Histone H4 9606
100 1KX4 3 B, F histone H4 8355
101 3AZN 2 B, F Histone H4 9606
102 1P3M 3 B, F Histone H4 8355
103 4J8V 2 B, F Histone H4 8355
104 5B33 2 B, F Histone H4 9606
105 3X1S 2 B, F Histone H4 9606
106 3LZ0 2 B, F Histone H4 8355
107 1P3F 3 B, F Histone H4 8355
108 1P3K 3 B, F Histone H4 8355
109 5B2I 2 B, F Histone H4 9606
110 1P3A 3 B, F Histone H4 8355
111 3LZ1 2 B, F Histone H4 8355
112 2IO5 3 C Histone H4 8355
113 5GXQ 2 B, F Histone H4 9606
114 2F8N 3 B, F Histone H4 8355
115 4Z5T 2 B, F Histone H4 9606
116 1U35 3 B, F Hist1h4i protein 10090
117 5XM0 2 B, F Histone H4 10090
118 3AV2 2 B, F Histone H4 9606
119 3AYW 2 B, F Histone H4 9606
120 5XF5 2 B, F Histone H4 9606
121 3AZJ 2 B, F Histone H4 9606
122 3REK 2 B, F Histone H4 8355
123 4KGC 2 B, F Histone H4 8355
124 1ZLA 3 B, F Histone H4 8355
125 5GSU 2 B, F Histone H4 9606
126 5XF4 2 B, F Histone H4 9606
127 3REL 2 B, F Histone H4 8355
128 5GSE 2 B, F, L, P Histone H4 9606
129 3REI 2 B, F Histone H4 8355
130 1P3B 3 B, F Histone H4 8355
131 3WKJ 2 B, F Histone H4 9606
132 3AZK 2 B, F Histone H4 9606
133 4J8X 2 B, F Histone H4 8355
134 3LEL 2 B, F, L, P Histone H4 8355
135 3KUY 2 B, F Histone H4 8355
136 4R8P 2 B, F Histone H4 8355
137 3AZM 2 B, F Histone H4 9606
138 3X1U 3 B, F Histone H4 9606
139 3MGS 2 B, F Histone H4 8355
140 3WA9 2 B, F Histone H4 9606
141 3C1C 2 B, F Histone H4 8355
142 3AZH 2 B, F Histone H4 9606
143 5B40 2 B, F Histone H4 9606
144 3WAA 2 B, F Histone H4 9606
145 5CPI 2 B, F Histone H4 9606
146 3AZE 2 B, F Histone H4 9606
147 3W96 2 B, F Histone H4 9606
148 6OM3 2 B, F, N, R Histone H4 8355
149 5XM1 2 B, F Histone H4 10090
150 5CPJ 2 B, F Histone H4 9606
151 5B24 2 B, F Histone H4 9606
152 5BS7 2 C, D Histone H4 8355
153 5C3I 3 C, G, K, O, S, W Histone H4 9606
154 2HIO 4 D PROTEIN (HISTONE H4) 9031
155 4QLC 4 B, F Histone H4 7227
156 4LD9 2 B, F Histone H4 8355
157 3O62 2 B, F Histone H4 8355
158 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
159 5KDM 2 B Histone H4 9606
160 3W97 2 B, F Histone H4 9606
161 4YM5 2 B, F Histone H4 9606
162 4YM6 2 B, F Histone H4 9606
163 2FJ7 4 B, F Histone H4 8355
164 3W98 2 B, F Histone H4 9606
165 4ZUX 2 B, F, L, P Histone H4 8355
166 3AN2 2 B, F Histone H4 9606
167 5BSA 2 C, D Histone H4 8355
168 3B6F 4 B, F Histone H4 8355
169 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
170 3B6G 4 B, F Histone H4 8355
171 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
172 3KXB 2 B, F Histone H4 8355
173 5HQ2 2 B Histone H4 8355
174 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
175 5OXV 4 B, F, L, P Histone H4 8355
176 1ZBB 4 B, F, b, f Histone H4 8355
177 6L49 2 B, F, L, P, T, X Histone H4 9606
178 6L4A 2 B, F, L, P, T, X Histone H4 9606
179 6UGM 2 B, F Histone H4 8355
180 6UH5 2 B, F Histone H4 8355
181 6KW4 2 B, R Histone H4 8355
182 6KW3 1 B, R Histone H4 8355
183 6SEG 2 B, F Histone H4 9606
184 6SE0 2 B, F Histone H4 9606
185 6SE6 2 B, F Histone H4 9606
186 6SEE 2 B, F Histone H4 9606
187 6SEF 2 B, F Histone H4 9606
188 6PX1 2 B, F Histone H4 8355
189 6PX3 2 B, F Histone H4 8355
190 6PWE 2 B, F Histone H4 7227
191 6PWF 2 B, F Histone H4 7227
192 6KIU 2 B, F Histone H4 8355
193 6KIV 2 B, F Histone H4 8355
194 6KIW 2 B, F Histone H4 8355
195 6KIX 2 B, F Histone H4 8355
196 6KIZ 2 B, F Histone H4 8355
197 6K1P 2 B, F Histone H4 8355
198 6RNY 2 B, F Histone H4 9606
199 6JYL 2 B, F Histone H4 8355
200 6R8Y 2 B Histone H4 9606
201 6R8Y 5 F Histone H4 9606
202 6R8Z 2 B, F Histone H4 9606
203 6R90 2 B, F Histone H4 9606
204 6R91 2 B, F Histone H4 9606
205 6R92 5 B, F Histone H4 9606
206 6R93 4 B, F Histone H4 9606
207 6R94 4 B, F Histone H4 9606
208 6R1U 2 B, F Histone H4 8355
209 6R25 5 B, F H4 8355
210 6O96 2 B, F Histone H4 8355
211 6R0C 2 B, F Histone H4 9606
212 6O22 5 F Histone H4 8355
213 6O1D 2 B, F Histone H4 9606
214 6NZO 2 B, F Histone H4 8355
215 6J99 2 B, F Histone H4 8355
216 6NQA 3 B, F Histone H4 8355
217 6NOG 2 B, F Histone H4 8355
218 6NN6 2 B, F Histone H4 8355
219 6J4W 20 b, f Histone H4 9606
220 6J4X 20 b, f Histone H4 9606
221 6J4Y 20 b, f Histone H4 9606
222 6J4Z 19 b, f Histone H4 9606
223 6J50 19 b, f Histone H4 9606
224 6J51 20 b, f Histone H4 9606
225 6NJ9 1 B, F Histone H4 8355
226 6NE3 2 B, F Histone H4 8355
227 6I84 5 O, U Histone H4 8355
228 6IRO 3 B, F Histone H4 8355
229 6IR9 20 b, f Histone H4 9606
230 6INQ 17 b, f Histone H4 9606
231 6MUO 2 B, F Histone H4 9606
232 6MUP 2 B, F Histone H4 9606
233 6HTS 6 J, N Histone H4 9606
234 6E0C 2 B, F Histone H4 9606
235 6E0P 2 B, F Histone H4 9606
236 6DZT 2 B, F Histone H4 7227
237 6A5O 17 b, f Histone H4 9606
238 6A5P 17 b, f Histone H4 9606
239 6A5R 17 b, f Histone H4 9606
240 6A5T 17 b, f Histone H4 9606
241 6A5U 17 b, f Histone H4 9606
242 6A5L 17 b, f Histone H4 9606
243 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
244 6FTX 2 B, F Histone H4 8355
245 6FML 10 N, R Histone H4 9606
246 5Z3L 2 B, F Histone H4 8355
247 5Z3O 2 B, F Histone H4 8355
248 5Z3T 3 B, F Histone H4 8355
249 5Z3U 3 B, F Histone H4 8355
250 5Z3V 3 B, F Histone H4 8355
251 6C0W 2 B, F Histone H4 9606
252 6BUZ 2 B, F Histone H4 9606
253 6ESF 2 B, F Histone H4 8355
254 6ESG 2 B, F Histone H4 8355
255 6ESH 2 B, F Histone H4 8355
256 6ESI 2 B, F Histone H4 8355
257 5O9G 2 B, F Histone H4 8355
258 5X0X 2 B, F Histone H4 8355
259 5X0Y 2 B, F Histone H4 8355
260 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
261 3C9K 4 D, H Histone H4 9031