6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3509
95 % 8 14 3182
90 % 9 16 2815
70 % 8 11 4460
50 % 221 299 73
40 % 221 299 96
30 % 221 299 95
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 200 279 20
95 % 222 304 18
90 % 229 313 20
70 % 230 312 28
50 % 230 312 66
40 % 230 312 90
30 % 230 312 92
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 9424
95 % 194 278 34
90 % 181 255 49
70 % 194 273 53
50 % 207 286 81
40 % 207 286 103
30 % 207 286 100
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 1669
95 % 153 189 80
90 % 197 274 43
70 % 205 285 49
50 % 210 292 76
40 % 210 292 99
30 % 210 292 98
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 37661
95 % 1 3 30006
90 % 1 3 28874
70 % 1 3 26087
50 % 1 3 22855
40 % 1 3 21265
30 % 1 3 19051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 6JOU 2 B, F Histone H4 9606
18 1HQ3 4 D, H HISTONE H4-VI 9031
19 5BNX 2 B Histone H4 9606
20 3UTA 2 B, F Histone H4 8355
21 6KVD 3 B, F Histone H4 9606
22 5X7X 2 B, F Histone H4 9606
23 5B31 2 B, F Histone H4 9606
24 5B1L 2 B, F Histone H4 10090
25 6K1K 2 B, F Histone H4 9606
26 3UTB 2 B, F Histone H4 8355
27 1M19 3 B, F Histone H4 8355
28 5AVB 2 B, F Histone H4 9606
29 5AVC 2 B, F Histone H4 9606
30 5AV5 2 B, F Histone H4 9606
31 3C1B 2 B, F Histone H4 8355
32 5B1M 2 B, F Histone H4 10090
33 2NQB 3 B, F Histone H4 7227
34 5JA4 2 B Histone H4 9606
35 5OMX 4 B, F Histone H4 8355
36 6JR1 2 B, F Histone H4 9606
37 5F99 2 B, F Histone H4 8355
38 5Z30 2 B, F Histone H4 9606
39 5JRG 2 B, F Histone H4 9606
40 3UT9 2 B, F Histone H4 8355
41 5B32 2 B, F Histone H4 9606
42 3R45 2 B Histone H4 9606
43 4WU8 4 B, F Histone H4 8355
44 1P3I 3 B, F Histone H4 8355
45 3MGR 2 B, F Histone H4 8355
46 1F66 3 B, F HISTONE H4 10090
47 3AZG 2 B, F Histone H4 9606
48 1M18 3 B, F Histone H4 8355
49 5B2J 2 B, F Histone H4 9606
50 2PYO 4 B, F Histone H4 7227
51 1P3L 3 B, F Histone H4 8355
52 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
53 5B0Y 2 B, F Histone H4 9606
54 6JR0 2 B, F Histone H4 9606
55 2CV5 3 B, F Histone H4 9606
56 5CP6 4 B, F Histone H4 8355
57 5ZBX 2 B, F Histone H4 9606
58 5XF6 2 B, F Histone H4 8355
59 3MGP 2 B, F Histone H4 8355
60 3MVD 2 B, F Histone H4 8355
61 4J8U 2 B, F Histone H4 8355
62 4WU9 2 B, F Histone H4 8355
63 3REH 2 B, F Histone H4 8355
64 3AZL 2 B, F Histone H4 9606
65 5Z23 2 B, F Histone H4 9606
66 3NQU 2 B Histone H4 9606
67 5BNV 2 B, E Histone H4 9606
68 3AFA 2 B, F Histone H4 9606
69 5E5A 3 B, F Histone H4 8355
70 3REJ 2 B, F Histone H4 8355
71 3AZF 2 B, F Histone H4 9606
72 5GTC 2 B, F Histone H4 9606
73 1P3P 3 B, F Histone H4 8355
74 3AV1 2 B, F Histone H4 9606
75 1M1A 3 B, F Histone H4 8355
76 5CPK 2 B, F Histone H4 9606
77 5AY8 2 B, F Histone H4 9606
78 3MNN 2 B, F Histone H4 8355
79 5BO0 2 B Histone H4 9606
80 1P3G 3 B, F Histone H4 8355
81 4J8W 2 B, F Histone H4 8355
82 1P34 3 B, F Histone H4 8355
83 5XF3 2 B, F Histone H4 9606
84 3X1V 3 B, F Histone H4 9606
85 5ONG 4 B, F Histone H4 8355
86 5ONW 4 B, F Histone H4 8355
87 5DNM 2 B, F Histone H4 8355
88 4HGA 3 C Histone H4 9606
89 4UUZ 2 B HISTONE H4 7227
90 6K1I 2 B, F Histone H4 9606
91 3MGQ 2 B, F Histone H4 8355
92 3WTP 2 B, F Histone H4 9606
93 3X1T 3 B, F Histone H4 9606
94 2NZD 4 B, F Histone H4 8355
95 3A6N 2 B, F Histone H4 9606
96 5DNN 2 B, F Histone H4 8355
97 5GT3 2 B, F Histone H4 9606
98 5GT0 2 B, F Histone H4 9606
99 3LJA 2 B, F Histone H4 8355
100 3AZI 2 B, F Histone H4 9606
101 3TU4 2 B, F Histone H4 8355
102 1P3O 3 B, F Histone H4 8355
103 4Z2M 3 H, J Histone H4 9606
104 1KX4 3 B, F histone H4 8355
105 3AZN 2 B, F Histone H4 9606
106 1P3M 3 B, F Histone H4 8355
107 4J8V 2 B, F Histone H4 8355
108 5B33 2 B, F Histone H4 9606
109 3X1S 2 B, F Histone H4 9606
110 3LZ0 2 B, F Histone H4 8355
111 1P3F 3 B, F Histone H4 8355
112 1P3K 3 B, F Histone H4 8355
113 5B2I 2 B, F Histone H4 9606
114 1P3A 3 B, F Histone H4 8355
115 3LZ1 2 B, F Histone H4 8355
116 2IO5 3 C Histone H4 8355
117 5GXQ 2 B, F Histone H4 9606
118 2F8N 3 B, F Histone H4 8355
119 4Z5T 2 B, F Histone H4 9606
120 1U35 3 B, F Hist1h4i protein 10090
121 5XM0 2 B, F Histone H4 10090
122 3AV2 2 B, F Histone H4 9606
123 3AYW 2 B, F Histone H4 9606
124 5XF5 2 B, F Histone H4 9606
125 3AZJ 2 B, F Histone H4 9606
126 3REK 2 B, F Histone H4 8355
127 4KGC 2 B, F Histone H4 8355
128 1ZLA 3 B, F Histone H4 8355
129 5GSU 2 B, F Histone H4 9606
130 5XF4 2 B, F Histone H4 9606
131 3REL 2 B, F Histone H4 8355
132 5GSE 2 B, F, L, P Histone H4 9606
133 3REI 2 B, F Histone H4 8355
134 1P3B 3 B, F Histone H4 8355
135 3WKJ 2 B, F Histone H4 9606
136 3AZK 2 B, F Histone H4 9606
137 4J8X 2 B, F Histone H4 8355
138 3LEL 2 B, F, L, P Histone H4 8355
139 3KUY 2 B, F Histone H4 8355
140 4R8P 2 B, F Histone H4 8355
141 3AZM 2 B, F Histone H4 9606
142 3X1U 3 B, F Histone H4 9606
143 3MGS 2 B, F Histone H4 8355
144 3WA9 2 B, F Histone H4 9606
145 3C1C 2 B, F Histone H4 8355
146 3AZH 2 B, F Histone H4 9606
147 5B40 2 B, F Histone H4 9606
148 3WAA 2 B, F Histone H4 9606
149 5CPI 2 B, F Histone H4 9606
150 3AZE 2 B, F Histone H4 9606
151 3W96 2 B, F Histone H4 9606
152 6OM3 2 B, F, N, R Histone H4 8355
153 5XM1 2 B, F Histone H4 10090
154 6K1J 2 B, F Histone H4 9606
155 5CPJ 2 B, F Histone H4 9606
156 5B24 2 B, F Histone H4 9606
157 5BS7 2 C, D Histone H4 8355
158 5C3I 3 C, G, K, O, S, W Histone H4 9606
159 2HIO 4 D PROTEIN (HISTONE H4) 9031
160 4QLC 4 B, F Histone H4 7227
161 4LD9 2 B, F Histone H4 8355
162 3O62 2 B, F Histone H4 8355
163 6KXV 2 B, F Histone H4 9606
164 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
165 5KDM 2 B Histone H4 9606
166 3W97 2 B, F Histone H4 9606
167 4YM5 2 B, F Histone H4 9606
168 4YM6 2 B, F Histone H4 9606
169 2FJ7 4 B, F Histone H4 8355
170 3W98 2 B, F Histone H4 9606
171 4ZUX 2 B, F, L, P Histone H4 8355
172 6XWT 2 B, D Histone H4 7227
173 3AN2 2 B, F Histone H4 9606
174 5BSA 2 C, D Histone H4 8355
175 6VYP 2 B, F, b, f Histone H4 8355
176 3B6F 4 B, F Histone H4 8355
177 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
178 3B6G 4 B, F Histone H4 8355
179 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
180 3KXB 2 B, F Histone H4 8355
181 6XWS 2 B Histone H4 7227
182 5HQ2 2 B Histone H4 8355
183 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
184 5OXV 4 B, F, L, P Histone H4 8355
185 1ZBB 4 B, F, b, f Histone H4 8355
186 7JO9 2 B, F Histone H4 9606
187 7JOA 2 B, F Histone H4 9606
188 6XJD 2 B, F Histone H4 9606
189 6X59 2 B, F Histone H4 9606
190 6X5A 2 B, F Histone H4 9606
191 6X0N 2 B, F, b, f Histone H4 8355
192 6WZ5 2 B, F Histone H4 8355
193 6WZ9 2 B, F Histone H4 8355
194 7C0M 2 B, F, b, f Histone H4 9606
195 6YOV 2 B Histone H4 9606
196 6YOV 6 F Histone H4 9606
197 6LTJ 2 B, F Histone H4 8355
198 6VEN 2 B, F Histone H4 8355
199 6V92 24 b, f Histone H4 9606
200 6TEM 2 B, F Histone H4 8355
201 6TDA 2 B, F Histone H4 8355
202 6UXW 2 S, W Histone H4 8355
203 6T9L 2 B, F Histone H4 8355
204 6T90 2 B, F Histone H4 9606
205 6T93 2 B, F Histone H4 9606
206 6T79 2 B, F Histone H4 9606
207 6T7A 2 B, F Histone H4 9606
208 6T7B 2 B, F Histone H4 9606
209 6T7C 2 B, F Histone H4 9606
210 6T7D 2 B, F Histone H4 9606
211 6UPK 2 B, F Histone H4 9606
212 6UPL 2 B, F Histone H4 9606
213 6L49 2 B, F, L, P, T, X Histone H4 9606
214 6L4A 2 B, F, L, P, T, X Histone H4 9606
215 6UGM 2 B, F Histone H4 8355
216 6UH5 2 B, F Histone H4 8355
217 6KW4 2 B, R Histone H4 8355
218 6KW5 13 S, W Histone H4 8355
219 6KW3 1 B, R Histone H4 8355
220 6SEG 2 B, F Histone H4 9606
221 6SE0 2 B, F Histone H4 9606
222 6SE6 2 B, F Histone H4 9606
223 6SEE 2 B, F Histone H4 9606
224 6SEF 2 B, F Histone H4 9606
225 6PX1 2 B, F Histone H4 8355
226 6PX3 2 B, F Histone H4 8355
227 6PWV 5 H, L Histone H4 8355
228 6PWW 5 H, L Histone H4 8355
229 6PWX 3 H, L Histone H4 8355
230 6PWE 2 B, F Histone H4 7227
231 6PWF 2 B, F Histone H4 7227
232 6KIU 2 B, F Histone H4 8355
233 6KIV 2 B, F Histone H4 8355
234 6KIW 2 B, F Histone H4 8355
235 6KIX 2 B, F Histone H4 8355
236 6KIZ 2 B, F Histone H4 8355
237 6S01 2 B, F Histone H4 8355
238 6RYU 2 B, F Histone H4 8355
239 6PA7 2 B, F Histone H4 8355
240 6RYR 2 B, F Histone H4 8355
241 6K1P 2 B, F Histone H4 8355
242 6RNY 2 B, F Histone H4 9606
243 6JYL 2 B, F Histone H4 8355
244 6R8Y 2 B Histone H4 9606
245 6R8Y 5 F Histone H4 9606
246 6R8Z 2 B, F Histone H4 9606
247 6R90 2 B, F Histone H4 9606
248 6R91 2 B, F Histone H4 9606
249 6R92 5 B, F Histone H4 9606
250 6R93 4 B, F Histone H4 9606
251 6R94 4 B, F Histone H4 9606
252 6R1U 2 B, F Histone H4 8355
253 6R25 5 B, F H4 8355
254 6O96 2 B, F Histone H4 8355
255 6R0C 2 B, F Histone H4 9606
256 6O22 5 F Histone H4 8355
257 6O1D 2 B, F Histone H4 9606
258 6NZO 2 B, F Histone H4 8355
259 6J99 2 B, F Histone H4 8355
260 6NQA 3 B, F Histone H4 8355
261 6NOG 2 B, F Histone H4 8355
262 6NN6 2 B, F Histone H4 8355
263 6J4W 20 b, f Histone H4 9606
264 6J4X 20 b, f Histone H4 9606
265 6J4Y 20 b, f Histone H4 9606
266 6J4Z 19 b, f Histone H4 9606
267 6J50 19 b, f Histone H4 9606
268 6J51 20 b, f Histone H4 9606
269 6NJ9 1 B, F Histone H4 8355
270 6NE3 2 B, F Histone H4 8355
271 6I84 5 O, U Histone H4 8355
272 6IRO 3 B, F Histone H4 8355
273 6IR9 20 b, f Histone H4 9606
274 6INQ 17 b, f Histone H4 9606
275 6MUO 2 B, F Histone H4 9606
276 6MUP 2 B, F Histone H4 9606
277 6HTS 6 J, N Histone H4 9606
278 6E0C 2 B, F Histone H4 9606
279 6E0P 2 B, F Histone H4 9606
280 6DZT 2 B, F Histone H4 7227
281 6A5O 17 b, f Histone H4 9606
282 6A5P 17 b, f Histone H4 9606
283 6A5R 17 b, f Histone H4 9606
284 6A5T 17 b, f Histone H4 9606
285 6A5U 17 b, f Histone H4 9606
286 6A5L 17 b, f Histone H4 9606
287 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
288 6FTX 2 B, F Histone H4 8355
289 6FML 10 N, R Histone H4 9606
290 5Z3L 2 B, F Histone H4 8355
291 5Z3O 2 B, F Histone H4 8355
292 5Z3U 3 B, F Histone H4 8355
293 5Z3V 3 B, F Histone H4 8355
294 6C0W 2 B, F Histone H4 9606
295 6BUZ 2 B, F Histone H4 9606
296 6ESF 2 B, F Histone H4 8355
297 6ESG 2 B, F Histone H4 8355
298 6ESH 2 B, F Histone H4 8355
299 6ESI 2 B, F Histone H4 8355
300 5O9G 2 B, F Histone H4 8355
301 5X0X 2 B, F Histone H4 8355
302 5X0Y 2 B, F Histone H4 8355
303 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
304 3C9K 4 D, H Histone H4 9031