6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3842
95 % 8 14 3307
90 % 9 16 2922
70 % 8 11 4641
50 % 241 319 63
40 % 241 319 83
30 % 241 319 91
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 221 300 9
95 % 243 325 17
90 % 250 334 18
70 % 251 333 25
50 % 251 333 58
40 % 251 333 77
30 % 251 333 81
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6122
95 % 216 300 18
90 % 199 273 44
70 % 212 291 38
50 % 225 304 69
40 % 225 304 88
30 % 225 304 97
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1605
95 % 169 205 75
90 % 218 295 25
70 % 226 306 31
50 % 231 313 67
40 % 231 313 86
30 % 231 313 94
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36825
95 % 1 3 30394
90 % 1 3 29239
70 % 1 3 26344
50 % 1 3 25020
40 % 1 3 22794
30 % 1 3 18885

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5GT0 4 D, H Histone H2B type 1-J 9606
2 7A08 5 c, g Histone H2B type 1-C/E/F/G/I 9606
3 7JO9 4 D, H Histone H2B type 1-C/E/F/G/I 9606
4 7JOA 4 D, H Histone H2B type 1-C/E/F/G/I 9606
5 6XJD 4 D, H Histone H2B type 1-C/E/F/G/I 9606
6 6X59 4 D, H Histone H2B type 1-C/E/F/G/I 9606
7 6X5A 4 D, H Histone H2B type 1-C/E/F/G/I 9606
8 6UPK 4 D Histone H2B 9606
9 6UPL 4 D, L Histone H2B 9606
10 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
11 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
12 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
13 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
14 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
15 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
16 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
17 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
18 6C0W 4 D, H Histone H2B 9606
19 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606