Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3552
95 % 7 13 3104
90 % 8 15 2749
70 % 7 10 4419
50 % 185 257 87
40 % 185 257 104
30 % 185 257 103
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 239 37
95 % 185 261 34
90 % 192 270 37
70 % 193 269 44
50 % 193 269 79
40 % 193 269 98
30 % 193 269 97
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8563
95 % 163 241 52
90 % 156 224 70
70 % 159 230 74
50 % 159 230 99
40 % 159 230 118
30 % 159 230 119
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2803
95 % 128 164 110
90 % 162 233 67
70 % 170 244 68
50 % 175 251 91
40 % 175 251 107
30 % 175 251 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33343
95 % 1 3 27668
90 % 1 3 26682
70 % 1 3 24235
50 % 1 3 23010
40 % 1 3 21091
30 % 1 3 18889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5GT0 4 D, H Histone H2B type 1-J 9606
2 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
3 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
4 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
5 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
6 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
7 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
8 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
9 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
10 6C0W 4 D, H Histone H2B 9606
11 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606