Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3683
95 % 7 13 3297
90 % 8 15 2831
70 % 7 10 4635
50 % 194 270 80
40 % 194 270 96
30 % 194 270 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 252 23
95 % 194 274 33
90 % 201 283 36
70 % 202 282 46
50 % 202 282 77
40 % 202 282 94
30 % 202 282 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8678
95 % 172 254 37
90 % 165 237 64
70 % 175 252 57
50 % 182 259 86
40 % 182 259 101
30 % 182 259 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2325
95 % 136 172 103
90 % 172 247 56
70 % 180 258 54
50 % 185 265 84
40 % 185 265 100
30 % 185 265 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 35441
95 % 1 3 28330
90 % 1 3 27279
70 % 1 3 24757
50 % 1 3 21753
40 % 1 3 19888
30 % 1 3 17859

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 6KVD 5 D, H Histone H2B type 1-J 9606
15 5X7X 4 D, H Histone H2B type 1-J 9606
16 5B31 4 D, H Histone H2B type 1-J 9606
17 5B1L 4 D, H Histone H2B type 3-A 10090
18 6K1K 4 D, H Histone H2B type 1-J 9606
19 3UTB 4 D, H Histone H2B 1.1 8355
20 1M19 5 D, H Histone H2B.1 8355
21 5AVB 4 D, H Histone H2B type 1-J 9606
22 5AVC 4 D, H Histone H2B type 1-J 9606
23 5AV5 4 D, H Histone H2B type 1-J 9606
24 3C1B 4 D, H Histone 2, H2bf 8364
25 5B1M 4 D, H Histone H2B type 3-A 10090
26 2NQB 5 D, H Histone H2B 7227
27 5OMX 6 D, H Histone H2B 1.1 8355
28 6JR1 4 D, H Histone H2B type 1-J 9606
29 5F99 4 D, H Histone H2B 1.1 8355
30 5Z30 4 D, H Histone H2B type 1-J 9606
31 5JRG 4 D, H Histone H2B type 1-J 9606
32 3UT9 4 D, H Histone H2B 1.1 8355
33 5B32 4 D, H Histone H2B type 1-J 9606
34 4WU8 6 D, H Histone H2B 1.1 8355
35 1P3I 5 D, H Histone H2B 8355
36 3MGR 4 D, H Histone H2B 1.1 8355
37 1F66 5 D, H HISTONE H2B 8355
38 3AZG 4 D, H Histone H2B type 1-J 9606
39 1M18 5 D, H Histone H2B.1 8355
40 5B2J 4 D, H Histone H2B type 1-J 9606
41 2PYO 6 D, H Histone H2B 7227
42 1P3L 5 D, H Histone H2B 8355
43 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
44 5B0Y 4 D, H Histone H2B type 1-J 9606
45 6JR0 4 D, H Histone H2B type 1-J 9606
46 2CV5 5 D, H Histone H2B K 9606
47 5CP6 6 D, H Histone H2B 1.1 8355
48 5ZBX 4 D, H Histone H2B type 1-J 9606
49 5BT1 3 D Histone H2B.1 4932
50 5XF6 4 D, H Histone H2B 1.1 8355
51 3MGP 4 D, H Histone H2B 1.1 8355
52 3MVD 4 D, H Histone H2B 1.1 8355
53 4J8U 4 D, H Histone H2B 1.1 8355
54 4WU9 4 D, H Histone H2B 1.1 8355
55 3REH 4 D, H Histone H2B 1.1 8355
56 3AZL 4 D, H Histone H2B type 1-J 9606
57 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
58 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
59 3AFA 4 D, H Histone H2B type 1-J 9606
60 5E5A 5 D, H Histone H2B 1.1 8355
61 3REJ 4 D, H Histone H2B 1.1 8355
62 3AZF 4 D, H Histone H2B type 1-J 9606
63 5GTC 4 D, H Histone H2B type 1-J 9606
64 1P3P 5 D, H Histone H2B 8355
65 3AV1 4 D, H Histone H2B type 1-J 9606
66 1M1A 5 D, H Histone H2B.1 8355
67 5CPK 4 D, H Histone H2B type 1-J 9606
68 5AY8 4 D, H Histone H2B type 1-J 9606
69 3MNN 4 D, H Histone H2B 1.1 8355
70 1P3G 5 D, H Histone H2B 8355
71 4J8W 4 D, H Histone H2B 1.1 8355
72 1P34 5 D, H Histone H2B 8355
73 5XF3 4 D, H Histone H2B type 1-J 9606
74 3X1V 5 D, H Histone H2B type 1-A 10090
75 5ONG 6 D, H Histone H2B 1.1 8355
76 5ONW 6 D, H Histone H2B 1.1 8355
77 5DNM 4 D, H Histone H2B 1.1 8355
78 6K1I 4 D, H Histone H2B type 1-J 9606
79 3MGQ 4 D, H Histone H2B 1.1 8355
80 3WTP 4 D, H Histone H2B type 1-J 9606
81 3X1T 5 D, H Histone H2B type 1-A 10090
82 2NZD 6 D, H Histone H2B 8355
83 3A6N 4 D, H Histone H2B type 1-J 9606
84 5DNN 4 D, H Histone H2B 1.1 8355
85 5GT3 4 D, H Histone H2B type 1-A 9606
86 5GT0 4 D, H Histone H2B type 1-J 9606
87 3LJA 4 D, H Histone H2B 1.1 8355
88 3AZI 4 D, H Histone H2B type 1-J 9606
89 3TU4 4 D, H Histone H2B 1.1 8355
90 1P3O 5 D, H Histone H2B 8355
91 1KX4 5 D, H histone H2B.2 8355
92 3AZN 4 D, H Histone H2B type 1-J 9606
93 1P3M 5 D, H Histone H2B 8355
94 4J8V 4 D, H Histone H2B 1.1 8355
95 5B33 4 D, H Histone H2B type 1-J 9606
96 3X1S 4 D, H Histone H2B type 1-B 9606
97 3LZ0 4 D, H Histone H2B 1.1 8355
98 1P3F 5 D, H Histone H2B 8355
99 1P3K 5 D, H Histone H2B 8355
100 5B2I 4 D, H Histone H2B type 1-J 9606
101 1P3A 5 D, H Histone H2B 8355
102 3LZ1 4 D, H Histone H2B 1.1 8355
103 5GXQ 4 D, H Histone H2B type 1-J 9606
104 2F8N 4 D Histone 3, H2ba 10090
105 2F8N 5 H Histone H2B.1 8355
106 4Z5T 4 D, H Histone H2B type 1-J 9606
107 1U35 5 D, H histone 3, H2ba 10090
108 5XM0 4 D, H Histone H2B type 3-A 10090
109 3AV2 4 D, H Histone H2B type 1-J 9606
110 3AYW 4 D, H Histone H2B type 1-J 9606
111 5XF5 4 D, H Histone H2B type 1-J 9606
112 3AZJ 4 D, H Histone H2B type 1-J 9606
113 3REK 4 D, H Histone H2B 1.1 8355
114 4KGC 4 D, H Histone H2B 1.1 8355
115 1ZLA 5 D, H histone H2B 8355
116 5GSU 4 D, H Histone H2B type 1-A 9606
117 5XF4 4 D, H Histone H2B type 1-J 9606
118 3REL 4 D, H Histone H2B 1.1 8355
119 5GSE 4 D, H, N Histone H2B type 1-J 9606
120 3REI 4 D, H Histone H2B 1.1 8355
121 1P3B 5 D, H Histone H2B 8355
122 3WKJ 4 D, H Histone H2B type 1-A 9606
123 4KUD 4 D, H Histone H2B.1 4932
124 3AZK 4 D, H Histone H2B type 1-J 9606
125 4J8X 4 D, H Histone H2B 1.1 8355
126 3LEL 4 D, H, N, R Histone H2B 1.1 8355
127 3KUY 4 D, H Histone H2B 8355
128 4R8P 4 D, H Histone H2B 1.1 8355
129 3AZM 4 D, H Histone H2B type 1-J 9606
130 3X1U 5 D, H Histone H2B type 1-B 9606
131 3MGS 4 D, H Histone H2B 1.1 8355
132 3WA9 4 D, H Histone H2B type 1-J 9606
133 1ID3 5 D, H HISTONE H2B.2 4932
134 3C1C 4 D, H Histone 2, H2bf 8364
135 3AZH 4 D, H Histone H2B type 1-J 9606
136 5B40 4 D, H Histone H2B type 1-J 9606
137 3WAA 4 D, H Histone H2B type 1-J 9606
138 5CPI 4 D, H Histone H2B type 1-J 9606
139 4JJN 4 D, H Histone H2B.2 4932
140 3W99 4 D, H Histone H2B type 1-J 9606
141 3AZE 4 D, H Histone H2B type 1-J 9606
142 3W96 4 D, H Histone H2B type 1-J 9606
143 6OM3 4 D, H, P, T Histone H2B 1.1 8355
144 5XM1 4 D, H Histone H2B type 3-A 10090
145 6K1J 4 D, H Histone H2B type 1-J 9606
146 5CPJ 4 D, H Histone H2B type 1-J 9606
147 5B24 4 D, H Histone H2B type 1-J 9606
148 2HIO 2 B PROTEIN (HISTONE H2B) 9031
149 4QLC 6 D, H Histone H2B 7227
150 4LD9 4 D, H Histone H2B 1.1 8355
151 3O62 4 D, H Histone H2B 1.1 8355
152 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
153 4YM5 4 D, H Histone H2B type 1-J 9606
154 4YM6 4 D, H Histone H2B type 1-J 9606
155 2FJ7 6 D, H Histone H2B 8355
156 3W98 4 D, H Histone H2B type 1-J 9606
157 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
158 3AN2 4 D, H Histone H2B type 1-J 9606
159 3B6F 6 D, H Histone H2B 1.1 8355
160 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
161 3B6G 6 D, H Histone H2B 1.1 8355
162 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
163 3KXB 4 D, H Histone H2B 1.1 8355
164 5HQ2 4 H Histone H2B 1.1 8355
165 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
166 5OXV 2 D, H, N, R Histone H2B 1.1 8355
167 1ZBB 6 D, H, d, h Histone H2B.1 8355
168 6VEN 4 D, H Histone H2B 1.1 8355
169 6V92 26 d, h Histone H2B type 1-K 9606
170 6T9L 4 D Histone H2B 1.1 8355
171 6T9L 5 H Histone H2B 8355
172 6UPH 4 D, H Histone H2B.1 28985
173 6UPK 4 D Histone H2B 9606
174 6UPL 4 D, L Histone H2B 9606
175 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
176 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
177 6UGM 4 D Histone H2B 8355
178 6UGM 5 H Histone H2B 1.1 8355
179 6UH5 4 D Histone H2B 8355
180 6UH5 5 H Histone H2B 8355
181 6KW4 20 P, T Histone H4 8355
182 6KW3 20 P, T Histone H4 8355
183 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
184 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
185 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
186 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
187 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
188 6PX1 4 D, H Histone H2B 1.1 8355
189 6PX3 4 D, H Histone H2B 1.1 8355
190 6PWV 7 J, N Histone H2B 1.1 8355
191 6PWW 7 J, N Histone H2B 1.1 8355
192 6PWX 5 J, N Histone H2B 1.1 8355
193 6PWE 4 D, H Histone H2B 7227
194 6PWF 4 D, H Histone H2B 7227
195 6KIU 4 D, H Histone H2B 1.1 8355
196 6KIV 4 D, H Histone H2B 1.1 8355
197 6KIW 4 D, H Histone H2B 1.1 8355
198 6KIX 4 D, H Histone H2B 1.1 8355
199 6KIZ 4 D, H Histone H2B 1.1 8355
200 6S01 4 D, H Histone H2B 1.1 8355
201 6K1P 4 D, H Histone H2B 1.1 8355
202 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
203 6JYL 4 D, H Histone H2B 1.1 8355
204 6R8Y 4 D, H Histone H2B type 1-J 9606
205 6R8Z 4 D, H Histone H2B type 1-J 9606
206 6R90 4 D, H Histone H2B type 1-J 9606
207 6R91 4 D, H Histone H2B type 1-J 9606
208 6R92 7 D, H Histone H2B type 1-J 9606
209 6R93 6 D, H Histone H2B type 1-J 9606
210 6R94 6 D, H Histone H2B type 1-J 9606
211 6R1U 4 D, H Histone H2B 1.1 8355
212 6R25 7 D, H H2B 8355
213 6O96 4 D, H Histone H2B 1.1 8355
214 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
215 6O1D 4 D, H Histone H2B type 1-J 9606
216 6NZO 4 D, H Histone H2B 1.1 8355
217 6J99 4 D, H Histone H2B 1.1 8355
218 6NQA 5 D, H Histone H2B 1.1 8355
219 6NOG 4 D, H Histone H2B 1.1 8355
220 6NN6 4 D, H Histone H2B 1.1 8355
221 6J4W 22 d, h Histone H2B type 1-J 9606
222 6J4X 22 d, h Histone H2B type 1-J 9606
223 6J4Y 22 d, h Histone H2B type 1-J 9606
224 6J4Z 21 d, h Histone H2B type 1-J 9606
225 6J50 21 d, h Histone H2B type 1-J 9606
226 6J51 22 d, h Histone H2B type 1-J 9606
227 6NJ9 3 D, H Histone H2B 1.1 8355
228 6I84 6 R, W Histone H2B 1.1 8355
229 6IRO 5 D, H Histone H2B 1.1 8355
230 6IR9 22 d, h Histone H2B type 1-J 9606
231 6INQ 19 d, h Histone H2B type 1-J 9606
232 6HTS 8 L, P Histone H2B type 1-J 9606
233 6E0C 4 D, H Histone H2B type 1-J 9606
234 6E0P 4 D, H Histone H2B type 1-J 9606
235 6DZT 4 D, H Histone H2B 7227
236 6A5O 19 d, h Histone H2B type 1-J 9606
237 6A5P 19 d, h Histone H2B type 1-J 9606
238 6A5R 19 d, h Histone H2B type 1-J 9606
239 6A5T 19 d, h Histone H2B type 1-J 9606
240 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
241 6A5L 19 d, h Histone H2B type 1-J 9606
242 6GEN 5 G, H Histone H2B.1 4932
243 6GEJ 5 G, H Histone H2B.1 4932
244 6G0L 4 D, H Histone H4 8355
245 6FTX 4 D, H Histone H2B 8364
246 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
247 5Z3L 4 D, H Histone H2B 1.1 8355
248 5Z3O 4 D, H Histone H2B 1.1 8355
249 5Z3T 5 D, H Histone H2B 1.1 8355
250 5Z3U 5 D, H Histone H2B 1.1 8355
251 5Z3V 5 D, H Histone H2B 1.1 8355
252 6C0W 4 D, H Histone H2B 9606
253 6BUZ 4 D, H Histone H2B 9606
254 6ESF 4 D, H Histone H2B 1.1 8355
255 6ESG 4 D, H Histone H2B 1.1 8355
256 6ESH 4 D, H Histone H2B 1.1 8355
257 6ESI 4 D Histone H2B 1.1 8355
258 6ESI 5 H Histone H2B 1.1 8355
259 5O9G 4 D Histone H2B 1.1 8355
260 5O9G 5 H Histone H2B 1.1 8355
261 5X0X 4 D, H Histone H2B 1.1 8355
262 5X0Y 4 D, H Histone H2B 1.1 8355
263 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
264 2RVQ 2 D Histone H2B type 1-J 9606
265 3C9K 2 B, F Histone H2B 7 9031