Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3563
95 % 7 13 3112
90 % 8 15 2763
70 % 7 10 4437
50 % 187 259 87
40 % 187 259 101
30 % 187 259 100
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 241 37
95 % 187 263 34
90 % 194 272 37
70 % 195 271 46
50 % 195 271 82
40 % 195 271 96
30 % 195 271 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8604
95 % 165 243 46
90 % 158 226 69
70 % 161 232 77
50 % 161 232 100
40 % 161 232 116
30 % 161 232 120
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2290
95 % 130 166 110
90 % 164 235 66
70 % 172 246 65
50 % 177 253 92
40 % 177 253 105
30 % 177 253 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33470
95 % 1 3 30289
90 % 1 3 29159
70 % 1 3 26293
50 % 1 3 21338
40 % 1 3 19627
30 % 1 3 18942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 5X7X 4 D, H Histone H2B type 1-J 9606
15 5B31 4 D, H Histone H2B type 1-J 9606
16 5B1L 4 D, H Histone H2B type 3-A 10090
17 3UTB 4 D, H Histone H2B 1.1 8355
18 1M19 5 D, H Histone H2B.1 8355
19 5AVB 4 D, H Histone H2B type 1-J 9606
20 5AVC 4 D, H Histone H2B type 1-J 9606
21 5AV5 4 D, H Histone H2B type 1-J 9606
22 3C1B 4 D, H Histone 2, H2bf 8364
23 5B1M 4 D, H Histone H2B type 3-A 10090
24 2NQB 5 D, H Histone H2B 7227
25 5OMX 6 D, H Histone H2B 1.1 8355
26 6JR1 4 D, H Histone H2B type 1-J 9606
27 5F99 4 D, H Histone H2B 1.1 8355
28 5Z30 4 D, H Histone H2B type 1-J 9606
29 5JRG 4 D, H Histone H2B type 1-J 9606
30 3UT9 4 D, H Histone H2B 1.1 8355
31 5B32 4 D, H Histone H2B type 1-J 9606
32 4WU8 6 D, H Histone H2B 1.1 8355
33 1P3I 5 D, H Histone H2B 8355
34 3MGR 4 D, H Histone H2B 1.1 8355
35 1F66 5 D, H HISTONE H2B 8355
36 3AZG 4 D, H Histone H2B type 1-J 9606
37 1M18 5 D, H Histone H2B.1 8355
38 5B2J 4 D, H Histone H2B type 1-J 9606
39 2PYO 6 D, H Histone H2B 7227
40 1P3L 5 D, H Histone H2B 8355
41 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
42 5B0Y 4 D, H Histone H2B type 1-J 9606
43 6JR0 4 D, H Histone H2B type 1-J 9606
44 2CV5 5 D, H Histone H2B K 9606
45 5CP6 6 D, H Histone H2B 1.1 8355
46 5ZBX 4 D, H Histone H2B type 1-J 9606
47 5BT1 3 D Histone H2B.1 4932
48 5XF6 4 D, H Histone H2B 1.1 8355
49 3MGP 4 D, H Histone H2B 1.1 8355
50 3MVD 4 D, H Histone H2B 1.1 8355
51 4J8U 4 D, H Histone H2B 1.1 8355
52 4WU9 4 D, H Histone H2B 1.1 8355
53 3REH 4 D, H Histone H2B 1.1 8355
54 3AZL 4 D, H Histone H2B type 1-J 9606
55 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
56 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
57 3AFA 4 D, H Histone H2B type 1-J 9606
58 5E5A 5 D, H Histone H2B 1.1 8355
59 3REJ 4 D, H Histone H2B 1.1 8355
60 3AZF 4 D, H Histone H2B type 1-J 9606
61 5GTC 4 D, H Histone H2B type 1-J 9606
62 1P3P 5 D, H Histone H2B 8355
63 3AV1 4 D, H Histone H2B type 1-J 9606
64 1M1A 5 D, H Histone H2B.1 8355
65 5CPK 4 D, H Histone H2B type 1-J 9606
66 5AY8 4 D, H Histone H2B type 1-J 9606
67 3MNN 4 D, H Histone H2B 1.1 8355
68 1P3G 5 D, H Histone H2B 8355
69 4J8W 4 D, H Histone H2B 1.1 8355
70 1P34 5 D, H Histone H2B 8355
71 5XF3 4 D, H Histone H2B type 1-J 9606
72 3X1V 5 D, H Histone H2B type 1-A 10090
73 5ONG 6 D, H Histone H2B 1.1 8355
74 5ONW 6 D, H Histone H2B 1.1 8355
75 5DNM 4 D, H Histone H2B 1.1 8355
76 3MGQ 4 D, H Histone H2B 1.1 8355
77 3WTP 4 D, H Histone H2B type 1-J 9606
78 3X1T 5 D, H Histone H2B type 1-A 10090
79 2NZD 6 D, H Histone H2B 8355
80 3A6N 4 D, H Histone H2B type 1-J 9606
81 5DNN 4 D, H Histone H2B 1.1 8355
82 5GT3 4 D, H Histone H2B type 1-A 9606
83 5GT0 4 D, H Histone H2B type 1-J 9606
84 3LJA 4 D, H Histone H2B 1.1 8355
85 3AZI 4 D, H Histone H2B type 1-J 9606
86 3TU4 4 D, H Histone H2B 1.1 8355
87 1P3O 5 D, H Histone H2B 8355
88 1KX4 5 D, H histone H2B.2 8355
89 3AZN 4 D, H Histone H2B type 1-J 9606
90 1P3M 5 D, H Histone H2B 8355
91 4J8V 4 D, H Histone H2B 1.1 8355
92 5B33 4 D, H Histone H2B type 1-J 9606
93 3X1S 4 D, H Histone H2B type 1-B 9606
94 3LZ0 4 D, H Histone H2B 1.1 8355
95 1P3F 5 D, H Histone H2B 8355
96 1P3K 5 D, H Histone H2B 8355
97 5B2I 4 D, H Histone H2B type 1-J 9606
98 1P3A 5 D, H Histone H2B 8355
99 3LZ1 4 D, H Histone H2B 1.1 8355
100 5GXQ 4 D, H Histone H2B type 1-J 9606
101 2F8N 4 D Histone 3, H2ba 10090
102 2F8N 5 H Histone H2B.1 8355
103 4Z5T 4 D, H Histone H2B type 1-J 9606
104 1U35 5 D, H histone 3, H2ba 10090
105 5XM0 4 D, H Histone H2B type 3-A 10090
106 3AV2 4 D, H Histone H2B type 1-J 9606
107 3AYW 4 D, H Histone H2B type 1-J 9606
108 5XF5 4 D, H Histone H2B type 1-J 9606
109 3AZJ 4 D, H Histone H2B type 1-J 9606
110 3REK 4 D, H Histone H2B 1.1 8355
111 4KGC 4 D, H Histone H2B 1.1 8355
112 1ZLA 5 D, H histone H2B 8355
113 5GSU 4 D, H Histone H2B type 1-A 9606
114 5XF4 4 D, H Histone H2B type 1-J 9606
115 3REL 4 D, H Histone H2B 1.1 8355
116 5GSE 4 D, H, N Histone H2B type 1-J 9606
117 3REI 4 D, H Histone H2B 1.1 8355
118 1P3B 5 D, H Histone H2B 8355
119 3WKJ 4 D, H Histone H2B type 1-A 9606
120 4KUD 4 D, H Histone H2B.1 4932
121 3AZK 4 D, H Histone H2B type 1-J 9606
122 4J8X 4 D, H Histone H2B 1.1 8355
123 3LEL 4 D, H, N, R Histone H2B 1.1 8355
124 3KUY 4 D, H Histone H2B 8355
125 4R8P 4 D, H Histone H2B 1.1 8355
126 3AZM 4 D, H Histone H2B type 1-J 9606
127 3X1U 5 D, H Histone H2B type 1-B 9606
128 3MGS 4 D, H Histone H2B 1.1 8355
129 3WA9 4 D, H Histone H2B type 1-J 9606
130 1ID3 5 D, H HISTONE H2B.2 4932
131 3C1C 4 D, H Histone 2, H2bf 8364
132 3AZH 4 D, H Histone H2B type 1-J 9606
133 5B40 4 D, H Histone H2B type 1-J 9606
134 3WAA 4 D, H Histone H2B type 1-J 9606
135 5CPI 4 D, H Histone H2B type 1-J 9606
136 4JJN 4 D, H Histone H2B.2 4932
137 3W99 4 D, H Histone H2B type 1-J 9606
138 3AZE 4 D, H Histone H2B type 1-J 9606
139 3W96 4 D, H Histone H2B type 1-J 9606
140 6OM3 4 D, H, P, T Histone H2B 1.1 8355
141 5XM1 4 D, H Histone H2B type 3-A 10090
142 5CPJ 4 D, H Histone H2B type 1-J 9606
143 5B24 4 D, H Histone H2B type 1-J 9606
144 2HIO 2 B PROTEIN (HISTONE H2B) 9031
145 4QLC 6 D, H Histone H2B 7227
146 4LD9 4 D, H Histone H2B 1.1 8355
147 3O62 4 D, H Histone H2B 1.1 8355
148 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
149 4YM5 4 D, H Histone H2B type 1-J 9606
150 4YM6 4 D, H Histone H2B type 1-J 9606
151 2FJ7 6 D, H Histone H2B 8355
152 3W98 4 D, H Histone H2B type 1-J 9606
153 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
154 3AN2 4 D, H Histone H2B type 1-J 9606
155 3B6F 6 D, H Histone H2B 1.1 8355
156 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
157 3B6G 6 D, H Histone H2B 1.1 8355
158 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
159 3KXB 4 D, H Histone H2B 1.1 8355
160 5HQ2 4 H Histone H2B 1.1 8355
161 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
162 5OXV 2 D, H, N, R Histone H2B 1.1 8355
163 1ZBB 6 D, H, d, h Histone H2B.1 8355
164 6UPH 4 D, H Histone H2B.1 28985
165 6UPK 4 D Histone H2B 9606
166 6UPL 4 D, L Histone H2B 9606
167 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
168 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
169 6UGM 4 D Histone H2B 8355
170 6UGM 5 H Histone H2B 1.1 8355
171 6UH5 4 D Histone H2B 8355
172 6UH5 5 H Histone H2B 8355
173 6KW4 20 P, T Histone H4 8355
174 6KW3 20 P, T Histone H4 8355
175 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
176 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
177 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
178 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
179 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
180 6PX1 4 D, H Histone H2B 1.1 8355
181 6PX3 4 D, H Histone H2B 1.1 8355
182 6PWE 4 D, H Histone H2B 7227
183 6PWF 4 D, H Histone H2B 7227
184 6KIU 4 D, H Histone H2B 1.1 8355
185 6KIV 4 D, H Histone H2B 1.1 8355
186 6KIW 4 D, H Histone H2B 1.1 8355
187 6KIX 4 D, H Histone H2B 1.1 8355
188 6KIZ 4 D, H Histone H2B 1.1 8355
189 6K1P 4 D, H Histone H2B 1.1 8355
190 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
191 6JYL 4 D, H Histone H2B 1.1 8355
192 6R8Y 4 D, H Histone H2B type 1-J 9606
193 6R8Z 4 D, H Histone H2B type 1-J 9606
194 6R90 4 D, H Histone H2B type 1-J 9606
195 6R91 4 D, H Histone H2B type 1-J 9606
196 6R92 7 D, H Histone H2B type 1-J 9606
197 6R93 6 D, H Histone H2B type 1-J 9606
198 6R94 6 D, H Histone H2B type 1-J 9606
199 6R1U 4 D, H Histone H2B 1.1 8355
200 6R25 7 D, H H2B 8355
201 6O96 4 D, H Histone H2B 1.1 8355
202 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
203 6O1D 4 D, H Histone H2B type 1-J 9606
204 6NZO 4 D, H Histone H2B 1.1 8355
205 6J99 4 D, H Histone H2B 1.1 8355
206 6NQA 5 D, H Histone H2B 1.1 8355
207 6NOG 4 D, H Histone H2B 1.1 8355
208 6NN6 4 D, H Histone H2B 1.1 8355
209 6J4W 22 d, h Histone H2B type 1-J 9606
210 6J4X 22 d, h Histone H2B type 1-J 9606
211 6J4Y 22 d, h Histone H2B type 1-J 9606
212 6J4Z 21 d, h Histone H2B type 1-J 9606
213 6J50 21 d, h Histone H2B type 1-J 9606
214 6J51 22 d, h Histone H2B type 1-J 9606
215 6NJ9 3 D, H Histone H2B 1.1 8355
216 6I84 6 R, W Histone H2B 1.1 8355
217 6IRO 5 D, H Histone H2B 1.1 8355
218 6IR9 22 d, h Histone H2B type 1-J 9606
219 6INQ 19 d, h Histone H2B type 1-J 9606
220 6HTS 8 L, P Histone H2B type 1-J 9606
221 6E0C 4 D, H Histone H2B type 1-J 9606
222 6E0P 4 D, H Histone H2B type 1-J 9606
223 6DZT 4 D, H Histone H2B 7227
224 6A5O 19 d, h Histone H2B type 1-J 9606
225 6A5P 19 d, h Histone H2B type 1-J 9606
226 6A5R 19 d, h Histone H2B type 1-J 9606
227 6A5T 19 d, h Histone H2B type 1-J 9606
228 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
229 6A5L 19 d, h Histone H2B type 1-J 9606
230 6GEN 5 G, H Histone H2B.1 4932
231 6GEJ 5 G, H Histone H2B.1 4932
232 6G0L 4 D, H Histone H4 8355
233 6FTX 4 D, H Histone H2B 8364
234 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
235 5Z3L 4 D, H Histone H2B 1.1 8355
236 5Z3O 4 D, H Histone H2B 1.1 8355
237 5Z3T 5 D, H Histone H2B 1.1 8355
238 5Z3U 5 D, H Histone H2B 1.1 8355
239 5Z3V 5 D, H Histone H2B 1.1 8355
240 6C0W 4 D, H Histone H2B 9606
241 6BUZ 4 D, H Histone H2B 9606
242 6ESF 4 D, H Histone H2B 1.1 8355
243 6ESG 4 D, H Histone H2B 1.1 8355
244 6ESH 4 D, H Histone H2B 1.1 8355
245 6ESI 4 D Histone H2B 1.1 8355
246 6ESI 5 H Histone H2B 1.1 8355
247 5O9G 4 D Histone H2B 1.1 8355
248 5O9G 5 H Histone H2B 1.1 8355
249 5X0X 4 D, H Histone H2B 1.1 8355
250 5X0Y 4 D, H Histone H2B 1.1 8355
251 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
252 2RVQ 2 D Histone H2B type 1-J 9606
253 3C9K 2 B, F Histone H2B 7 9031