Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3552
95 % 7 13 3104
90 % 8 15 2749
70 % 7 10 4419
50 % 185 257 87
40 % 185 257 104
30 % 185 257 103
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 239 37
95 % 185 261 34
90 % 192 270 37
70 % 193 269 44
50 % 193 269 79
40 % 193 269 98
30 % 193 269 97
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8563
95 % 163 241 52
90 % 156 224 70
70 % 159 230 74
50 % 159 230 99
40 % 159 230 118
30 % 159 230 119
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2803
95 % 128 164 110
90 % 162 233 67
70 % 170 244 68
50 % 175 251 91
40 % 175 251 107
30 % 175 251 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33343
95 % 1 3 27668
90 % 1 3 26682
70 % 1 3 24235
50 % 1 3 23010
40 % 1 3 21091
30 % 1 3 18889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 5X7X 4 D, H Histone H2B type 1-J 9606
15 5B31 4 D, H Histone H2B type 1-J 9606
16 5B1L 4 D, H Histone H2B type 3-A 10090
17 3UTB 4 D, H Histone H2B 1.1 8355
18 1M19 5 D, H Histone H2B.1 8355
19 5AVB 4 D, H Histone H2B type 1-J 9606
20 5AVC 4 D, H Histone H2B type 1-J 9606
21 5AV5 4 D, H Histone H2B type 1-J 9606
22 3C1B 4 D, H Histone 2, H2bf 8364
23 5B1M 4 D, H Histone H2B type 3-A 10090
24 2NQB 5 D, H Histone H2B 7227
25 5OMX 6 D, H Histone H2B 1.1 8355
26 6JR1 4 D, H Histone H2B type 1-J 9606
27 5F99 4 D, H Histone H2B 1.1 8355
28 5Z30 4 D, H Histone H2B type 1-J 9606
29 5JRG 4 D, H Histone H2B type 1-J 9606
30 3UT9 4 D, H Histone H2B 1.1 8355
31 5B32 4 D, H Histone H2B type 1-J 9606
32 4WU8 6 D, H Histone H2B 1.1 8355
33 1P3I 5 D, H Histone H2B 8355
34 3MGR 4 D, H Histone H2B 1.1 8355
35 1F66 5 D, H HISTONE H2B 8355
36 3AZG 4 D, H Histone H2B type 1-J 9606
37 1M18 5 D, H Histone H2B.1 8355
38 5B2J 4 D, H Histone H2B type 1-J 9606
39 2PYO 6 D, H Histone H2B 7227
40 1P3L 5 D, H Histone H2B 8355
41 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
42 5B0Y 4 D, H Histone H2B type 1-J 9606
43 6JR0 4 D, H Histone H2B type 1-J 9606
44 2CV5 5 D, H Histone H2B K 9606
45 5CP6 6 D, H Histone H2B 1.1 8355
46 5ZBX 4 D, H Histone H2B type 1-J 9606
47 5XF6 4 D, H Histone H2B 1.1 8355
48 3MGP 4 D, H Histone H2B 1.1 8355
49 3MVD 4 D, H Histone H2B 1.1 8355
50 4J8U 4 D, H Histone H2B 1.1 8355
51 4WU9 4 D, H Histone H2B 1.1 8355
52 3REH 4 D, H Histone H2B 1.1 8355
53 3AZL 4 D, H Histone H2B type 1-J 9606
54 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
55 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
56 3AFA 4 D, H Histone H2B type 1-J 9606
57 5E5A 5 D, H Histone H2B 1.1 8355
58 3REJ 4 D, H Histone H2B 1.1 8355
59 3AZF 4 D, H Histone H2B type 1-J 9606
60 5GTC 4 D, H Histone H2B type 1-J 9606
61 1P3P 5 D, H Histone H2B 8355
62 3AV1 4 D, H Histone H2B type 1-J 9606
63 1M1A 5 D, H Histone H2B.1 8355
64 5CPK 4 D, H Histone H2B type 1-J 9606
65 5AY8 4 D, H Histone H2B type 1-J 9606
66 3MNN 4 D, H Histone H2B 1.1 8355
67 1P3G 5 D, H Histone H2B 8355
68 4J8W 4 D, H Histone H2B 1.1 8355
69 1P34 5 D, H Histone H2B 8355
70 5XF3 4 D, H Histone H2B type 1-J 9606
71 3X1V 5 D, H Histone H2B type 1-A 10090
72 5ONG 6 D, H Histone H2B 1.1 8355
73 5ONW 6 D, H Histone H2B 1.1 8355
74 5DNM 4 D, H Histone H2B 1.1 8355
75 3MGQ 4 D, H Histone H2B 1.1 8355
76 3WTP 4 D, H Histone H2B type 1-J 9606
77 3X1T 5 D, H Histone H2B type 1-A 10090
78 2NZD 6 D, H Histone H2B 8355
79 3A6N 4 D, H Histone H2B type 1-J 9606
80 5DNN 4 D, H Histone H2B 1.1 8355
81 5GT3 4 D, H Histone H2B type 1-A 9606
82 5GT0 4 D, H Histone H2B type 1-J 9606
83 3LJA 4 D, H Histone H2B 1.1 8355
84 3AZI 4 D, H Histone H2B type 1-J 9606
85 3TU4 4 D, H Histone H2B 1.1 8355
86 1P3O 5 D, H Histone H2B 8355
87 1KX4 5 D, H histone H2B.2 8355
88 3AZN 4 D, H Histone H2B type 1-J 9606
89 1P3M 5 D, H Histone H2B 8355
90 4J8V 4 D, H Histone H2B 1.1 8355
91 5B33 4 D, H Histone H2B type 1-J 9606
92 3X1S 4 D, H Histone H2B type 1-B 9606
93 3LZ0 4 D, H Histone H2B 1.1 8355
94 1P3F 5 D, H Histone H2B 8355
95 1P3K 5 D, H Histone H2B 8355
96 5B2I 4 D, H Histone H2B type 1-J 9606
97 1P3A 5 D, H Histone H2B 8355
98 3LZ1 4 D, H Histone H2B 1.1 8355
99 5GXQ 4 D, H Histone H2B type 1-J 9606
100 2F8N 4 D Histone 3, H2ba 10090
101 2F8N 5 H Histone H2B.1 8355
102 4Z5T 4 D, H Histone H2B type 1-J 9606
103 1U35 5 D, H histone 3, H2ba 10090
104 5XM0 4 D, H Histone H2B type 3-A 10090
105 3AV2 4 D, H Histone H2B type 1-J 9606
106 3AYW 4 D, H Histone H2B type 1-J 9606
107 5XF5 4 D, H Histone H2B type 1-J 9606
108 3AZJ 4 D, H Histone H2B type 1-J 9606
109 3REK 4 D, H Histone H2B 1.1 8355
110 4KGC 4 D, H Histone H2B 1.1 8355
111 1ZLA 5 D, H histone H2B 8355
112 5GSU 4 D, H Histone H2B type 1-A 9606
113 5XF4 4 D, H Histone H2B type 1-J 9606
114 3REL 4 D, H Histone H2B 1.1 8355
115 5GSE 4 D, H, N Histone H2B type 1-J 9606
116 3REI 4 D, H Histone H2B 1.1 8355
117 1P3B 5 D, H Histone H2B 8355
118 3WKJ 4 D, H Histone H2B type 1-A 9606
119 3AZK 4 D, H Histone H2B type 1-J 9606
120 4J8X 4 D, H Histone H2B 1.1 8355
121 3LEL 4 D, H, N, R Histone H2B 1.1 8355
122 3KUY 4 D, H Histone H2B 8355
123 4R8P 4 D, H Histone H2B 1.1 8355
124 3AZM 4 D, H Histone H2B type 1-J 9606
125 3X1U 5 D, H Histone H2B type 1-B 9606
126 3MGS 4 D, H Histone H2B 1.1 8355
127 3WA9 4 D, H Histone H2B type 1-J 9606
128 3C1C 4 D, H Histone 2, H2bf 8364
129 3AZH 4 D, H Histone H2B type 1-J 9606
130 5B40 4 D, H Histone H2B type 1-J 9606
131 3WAA 4 D, H Histone H2B type 1-J 9606
132 5CPI 4 D, H Histone H2B type 1-J 9606
133 3W99 4 D, H Histone H2B type 1-J 9606
134 3AZE 4 D, H Histone H2B type 1-J 9606
135 3W96 4 D, H Histone H2B type 1-J 9606
136 6OM3 4 D, H, P, T Histone H2B 1.1 8355
137 5XM1 4 D, H Histone H2B type 3-A 10090
138 5CPJ 4 D, H Histone H2B type 1-J 9606
139 5B24 4 D, H Histone H2B type 1-J 9606
140 2HIO 2 B PROTEIN (HISTONE H2B) 9031
141 4QLC 6 D, H Histone H2B 7227
142 4LD9 4 D, H Histone H2B 1.1 8355
143 3O62 4 D, H Histone H2B 1.1 8355
144 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
145 4YM5 4 D, H Histone H2B type 1-J 9606
146 4YM6 4 D, H Histone H2B type 1-J 9606
147 2FJ7 6 D, H Histone H2B 8355
148 3W98 4 D, H Histone H2B type 1-J 9606
149 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
150 3AN2 4 D, H Histone H2B type 1-J 9606
151 3B6F 6 D, H Histone H2B 1.1 8355
152 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
153 3B6G 6 D, H Histone H2B 1.1 8355
154 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
155 3KXB 4 D, H Histone H2B 1.1 8355
156 5HQ2 4 H Histone H2B 1.1 8355
157 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
158 5OXV 2 D, H, N, R Histone H2B 1.1 8355
159 1ZBB 6 D, H, d, h Histone H2B.1 8355
160 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
161 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
162 6UGM 4 D Histone H2B 8355
163 6UGM 5 H Histone H2B 1.1 8355
164 6UH5 4 D Histone H2B 8355
165 6UH5 5 H Histone H2B 8355
166 6KW4 20 P, T Histone H4 8355
167 6KW3 20 P, T Histone H4 8355
168 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
169 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
170 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
171 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
172 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
173 6PX1 4 D, H Histone H2B 1.1 8355
174 6PX3 4 D, H Histone H2B 1.1 8355
175 6PWE 4 D, H Histone H2B 7227
176 6PWF 4 D, H Histone H2B 7227
177 6KIU 4 D, H Histone H2B 1.1 8355
178 6KIV 4 D, H Histone H2B 1.1 8355
179 6KIW 4 D, H Histone H2B 1.1 8355
180 6KIX 4 D, H Histone H2B 1.1 8355
181 6KIZ 4 D, H Histone H2B 1.1 8355
182 6K1P 4 D, H Histone H2B 1.1 8355
183 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
184 6JYL 4 D, H Histone H2B 1.1 8355
185 6R8Y 4 D, H Histone H2B type 1-J 9606
186 6R8Z 4 D, H Histone H2B type 1-J 9606
187 6R90 4 D, H Histone H2B type 1-J 9606
188 6R91 4 D, H Histone H2B type 1-J 9606
189 6R92 7 D, H Histone H2B type 1-J 9606
190 6R93 6 D, H Histone H2B type 1-J 9606
191 6R94 6 D, H Histone H2B type 1-J 9606
192 6R1U 4 D, H Histone H2B 1.1 8355
193 6R25 7 D, H H2B 8355
194 6O96 4 D, H Histone H2B 1.1 8355
195 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
196 6O1D 4 D, H Histone H2B type 1-J 9606
197 6NZO 4 D, H Histone H2B 1.1 8355
198 6J99 4 D, H Histone H2B 1.1 8355
199 6NQA 5 D, H Histone H2B 1.1 8355
200 6NOG 4 D, H Histone H2B 1.1 8355
201 6NN6 4 D, H Histone H2B 1.1 8355
202 6J4W 22 d, h Histone H2B type 1-J 9606
203 6J4X 22 d, h Histone H2B type 1-J 9606
204 6J4Y 22 d, h Histone H2B type 1-J 9606
205 6J4Z 21 d, h Histone H2B type 1-J 9606
206 6J50 21 d, h Histone H2B type 1-J 9606
207 6J51 22 d, h Histone H2B type 1-J 9606
208 6NJ9 3 D, H Histone H2B 1.1 8355
209 6I84 6 R, W Histone H2B 1.1 8355
210 6IRO 5 D, H Histone H2B 1.1 8355
211 6IR9 22 d, h Histone H2B type 1-J 9606
212 6INQ 19 d, h Histone H2B type 1-J 9606
213 6HTS 8 L, P Histone H2B type 1-J 9606
214 6E0C 4 D, H Histone H2B type 1-J 9606
215 6E0P 4 D, H Histone H2B type 1-J 9606
216 6DZT 4 D, H Histone H2B 7227
217 6A5O 19 d, h Histone H2B type 1-J 9606
218 6A5P 19 d, h Histone H2B type 1-J 9606
219 6A5R 19 d, h Histone H2B type 1-J 9606
220 6A5T 19 d, h Histone H2B type 1-J 9606
221 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
222 6A5L 19 d, h Histone H2B type 1-J 9606
223 6G0L 4 D, H Histone H4 8355
224 6FTX 4 D, H Histone H2B 8364
225 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
226 5Z3L 4 D, H Histone H2B 1.1 8355
227 5Z3O 4 D, H Histone H2B 1.1 8355
228 5Z3T 5 D, H Histone H2B 1.1 8355
229 5Z3U 5 D, H Histone H2B 1.1 8355
230 5Z3V 5 D, H Histone H2B 1.1 8355
231 6C0W 4 D, H Histone H2B 9606
232 6BUZ 4 D, H Histone H2B 9606
233 6ESF 4 D, H Histone H2B 1.1 8355
234 6ESG 4 D, H Histone H2B 1.1 8355
235 6ESH 4 D, H Histone H2B 1.1 8355
236 6ESI 4 D Histone H2B 1.1 8355
237 6ESI 5 H Histone H2B 1.1 8355
238 5O9G 4 D Histone H2B 1.1 8355
239 5O9G 5 H Histone H2B 1.1 8355
240 5X0X 4 D, H Histone H2B 1.1 8355
241 5X0Y 4 D, H Histone H2B 1.1 8355
242 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
243 2RVQ 2 D Histone H2B type 1-J 9606
244 3C9K 2 B, F Histone H2B 7 9031