Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3683
95 % 7 13 3297
90 % 8 15 2831
70 % 7 10 4635
50 % 194 270 80
40 % 194 270 96
30 % 194 270 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 252 23
95 % 194 274 33
90 % 201 283 36
70 % 202 282 46
50 % 202 282 77
40 % 202 282 94
30 % 202 282 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8678
95 % 172 254 37
90 % 165 237 64
70 % 175 252 57
50 % 182 259 86
40 % 182 259 101
30 % 182 259 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2325
95 % 136 172 103
90 % 172 247 56
70 % 180 258 54
50 % 185 265 84
40 % 185 265 100
30 % 185 265 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 35441
95 % 1 3 28330
90 % 1 3 27279
70 % 1 3 24757
50 % 1 3 21753
40 % 1 3 19888
30 % 1 3 17859

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 6KVD 5 D, H Histone H2B type 1-J 9606
15 5X7X 4 D, H Histone H2B type 1-J 9606
16 5B31 4 D, H Histone H2B type 1-J 9606
17 5B1L 4 D, H Histone H2B type 3-A 10090
18 6K1K 4 D, H Histone H2B type 1-J 9606
19 3UTB 4 D, H Histone H2B 1.1 8355
20 1M19 5 D, H Histone H2B.1 8355
21 5AVB 4 D, H Histone H2B type 1-J 9606
22 5AVC 4 D, H Histone H2B type 1-J 9606
23 5AV5 4 D, H Histone H2B type 1-J 9606
24 3C1B 4 D, H Histone 2, H2bf 8364
25 5B1M 4 D, H Histone H2B type 3-A 10090
26 2NQB 5 D, H Histone H2B 7227
27 5OMX 6 D, H Histone H2B 1.1 8355
28 6JR1 4 D, H Histone H2B type 1-J 9606
29 5F99 4 D, H Histone H2B 1.1 8355
30 5Z30 4 D, H Histone H2B type 1-J 9606
31 5JRG 4 D, H Histone H2B type 1-J 9606
32 3UT9 4 D, H Histone H2B 1.1 8355
33 5B32 4 D, H Histone H2B type 1-J 9606
34 4WU8 6 D, H Histone H2B 1.1 8355
35 1P3I 5 D, H Histone H2B 8355
36 3MGR 4 D, H Histone H2B 1.1 8355
37 1F66 5 D, H HISTONE H2B 8355
38 3AZG 4 D, H Histone H2B type 1-J 9606
39 1M18 5 D, H Histone H2B.1 8355
40 5B2J 4 D, H Histone H2B type 1-J 9606
41 2PYO 6 D, H Histone H2B 7227
42 1P3L 5 D, H Histone H2B 8355
43 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
44 5B0Y 4 D, H Histone H2B type 1-J 9606
45 6JR0 4 D, H Histone H2B type 1-J 9606
46 2CV5 5 D, H Histone H2B K 9606
47 5CP6 6 D, H Histone H2B 1.1 8355
48 5ZBX 4 D, H Histone H2B type 1-J 9606
49 5XF6 4 D, H Histone H2B 1.1 8355
50 3MGP 4 D, H Histone H2B 1.1 8355
51 3MVD 4 D, H Histone H2B 1.1 8355
52 4J8U 4 D, H Histone H2B 1.1 8355
53 4WU9 4 D, H Histone H2B 1.1 8355
54 3REH 4 D, H Histone H2B 1.1 8355
55 3AZL 4 D, H Histone H2B type 1-J 9606
56 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
57 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
58 3AFA 4 D, H Histone H2B type 1-J 9606
59 5E5A 5 D, H Histone H2B 1.1 8355
60 3REJ 4 D, H Histone H2B 1.1 8355
61 3AZF 4 D, H Histone H2B type 1-J 9606
62 5GTC 4 D, H Histone H2B type 1-J 9606
63 1P3P 5 D, H Histone H2B 8355
64 3AV1 4 D, H Histone H2B type 1-J 9606
65 1M1A 5 D, H Histone H2B.1 8355
66 5CPK 4 D, H Histone H2B type 1-J 9606
67 5AY8 4 D, H Histone H2B type 1-J 9606
68 3MNN 4 D, H Histone H2B 1.1 8355
69 1P3G 5 D, H Histone H2B 8355
70 4J8W 4 D, H Histone H2B 1.1 8355
71 1P34 5 D, H Histone H2B 8355
72 5XF3 4 D, H Histone H2B type 1-J 9606
73 3X1V 5 D, H Histone H2B type 1-A 10090
74 5ONG 6 D, H Histone H2B 1.1 8355
75 5ONW 6 D, H Histone H2B 1.1 8355
76 5DNM 4 D, H Histone H2B 1.1 8355
77 6K1I 4 D, H Histone H2B type 1-J 9606
78 3MGQ 4 D, H Histone H2B 1.1 8355
79 3WTP 4 D, H Histone H2B type 1-J 9606
80 3X1T 5 D, H Histone H2B type 1-A 10090
81 2NZD 6 D, H Histone H2B 8355
82 3A6N 4 D, H Histone H2B type 1-J 9606
83 5DNN 4 D, H Histone H2B 1.1 8355
84 5GT3 4 D, H Histone H2B type 1-A 9606
85 5GT0 4 D, H Histone H2B type 1-J 9606
86 3LJA 4 D, H Histone H2B 1.1 8355
87 3AZI 4 D, H Histone H2B type 1-J 9606
88 3TU4 4 D, H Histone H2B 1.1 8355
89 1P3O 5 D, H Histone H2B 8355
90 1KX4 5 D, H histone H2B.2 8355
91 3AZN 4 D, H Histone H2B type 1-J 9606
92 1P3M 5 D, H Histone H2B 8355
93 4J8V 4 D, H Histone H2B 1.1 8355
94 5B33 4 D, H Histone H2B type 1-J 9606
95 3X1S 4 D, H Histone H2B type 1-B 9606
96 3LZ0 4 D, H Histone H2B 1.1 8355
97 1P3F 5 D, H Histone H2B 8355
98 1P3K 5 D, H Histone H2B 8355
99 5B2I 4 D, H Histone H2B type 1-J 9606
100 1P3A 5 D, H Histone H2B 8355
101 3LZ1 4 D, H Histone H2B 1.1 8355
102 5GXQ 4 D, H Histone H2B type 1-J 9606
103 2F8N 4 D Histone 3, H2ba 10090
104 2F8N 5 H Histone H2B.1 8355
105 4Z5T 4 D, H Histone H2B type 1-J 9606
106 1U35 5 D, H histone 3, H2ba 10090
107 5XM0 4 D, H Histone H2B type 3-A 10090
108 3AV2 4 D, H Histone H2B type 1-J 9606
109 3AYW 4 D, H Histone H2B type 1-J 9606
110 5XF5 4 D, H Histone H2B type 1-J 9606
111 3AZJ 4 D, H Histone H2B type 1-J 9606
112 3REK 4 D, H Histone H2B 1.1 8355
113 4KGC 4 D, H Histone H2B 1.1 8355
114 1ZLA 5 D, H histone H2B 8355
115 5GSU 4 D, H Histone H2B type 1-A 9606
116 5XF4 4 D, H Histone H2B type 1-J 9606
117 3REL 4 D, H Histone H2B 1.1 8355
118 5GSE 4 D, H, N Histone H2B type 1-J 9606
119 3REI 4 D, H Histone H2B 1.1 8355
120 1P3B 5 D, H Histone H2B 8355
121 3WKJ 4 D, H Histone H2B type 1-A 9606
122 3AZK 4 D, H Histone H2B type 1-J 9606
123 4J8X 4 D, H Histone H2B 1.1 8355
124 3LEL 4 D, H, N, R Histone H2B 1.1 8355
125 3KUY 4 D, H Histone H2B 8355
126 4R8P 4 D, H Histone H2B 1.1 8355
127 3AZM 4 D, H Histone H2B type 1-J 9606
128 3X1U 5 D, H Histone H2B type 1-B 9606
129 3MGS 4 D, H Histone H2B 1.1 8355
130 3WA9 4 D, H Histone H2B type 1-J 9606
131 3C1C 4 D, H Histone 2, H2bf 8364
132 3AZH 4 D, H Histone H2B type 1-J 9606
133 5B40 4 D, H Histone H2B type 1-J 9606
134 3WAA 4 D, H Histone H2B type 1-J 9606
135 5CPI 4 D, H Histone H2B type 1-J 9606
136 3W99 4 D, H Histone H2B type 1-J 9606
137 3AZE 4 D, H Histone H2B type 1-J 9606
138 3W96 4 D, H Histone H2B type 1-J 9606
139 6OM3 4 D, H, P, T Histone H2B 1.1 8355
140 5XM1 4 D, H Histone H2B type 3-A 10090
141 6K1J 4 D, H Histone H2B type 1-J 9606
142 5CPJ 4 D, H Histone H2B type 1-J 9606
143 5B24 4 D, H Histone H2B type 1-J 9606
144 2HIO 2 B PROTEIN (HISTONE H2B) 9031
145 4QLC 6 D, H Histone H2B 7227
146 4LD9 4 D, H Histone H2B 1.1 8355
147 3O62 4 D, H Histone H2B 1.1 8355
148 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
149 4YM5 4 D, H Histone H2B type 1-J 9606
150 4YM6 4 D, H Histone H2B type 1-J 9606
151 2FJ7 6 D, H Histone H2B 8355
152 3W98 4 D, H Histone H2B type 1-J 9606
153 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
154 3AN2 4 D, H Histone H2B type 1-J 9606
155 3B6F 6 D, H Histone H2B 1.1 8355
156 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
157 3B6G 6 D, H Histone H2B 1.1 8355
158 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
159 3KXB 4 D, H Histone H2B 1.1 8355
160 5HQ2 4 H Histone H2B 1.1 8355
161 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
162 5OXV 2 D, H, N, R Histone H2B 1.1 8355
163 1ZBB 6 D, H, d, h Histone H2B.1 8355
164 6VEN 4 D, H Histone H2B 1.1 8355
165 6V92 26 d, h Histone H2B type 1-K 9606
166 6T9L 4 D Histone H2B 1.1 8355
167 6T9L 5 H Histone H2B 8355
168 6UPK 4 D Histone H2B 9606
169 6UPL 4 D, L Histone H2B 9606
170 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
171 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
172 6UGM 4 D Histone H2B 8355
173 6UGM 5 H Histone H2B 1.1 8355
174 6UH5 4 D Histone H2B 8355
175 6UH5 5 H Histone H2B 8355
176 6KW4 20 P, T Histone H4 8355
177 6KW3 20 P, T Histone H4 8355
178 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
179 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
180 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
181 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
182 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
183 6PX1 4 D, H Histone H2B 1.1 8355
184 6PX3 4 D, H Histone H2B 1.1 8355
185 6PWV 7 J, N Histone H2B 1.1 8355
186 6PWW 7 J, N Histone H2B 1.1 8355
187 6PWX 5 J, N Histone H2B 1.1 8355
188 6PWE 4 D, H Histone H2B 7227
189 6PWF 4 D, H Histone H2B 7227
190 6KIU 4 D, H Histone H2B 1.1 8355
191 6KIV 4 D, H Histone H2B 1.1 8355
192 6KIW 4 D, H Histone H2B 1.1 8355
193 6KIX 4 D, H Histone H2B 1.1 8355
194 6KIZ 4 D, H Histone H2B 1.1 8355
195 6S01 4 D, H Histone H2B 1.1 8355
196 6K1P 4 D, H Histone H2B 1.1 8355
197 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
198 6JYL 4 D, H Histone H2B 1.1 8355
199 6R8Y 4 D, H Histone H2B type 1-J 9606
200 6R8Z 4 D, H Histone H2B type 1-J 9606
201 6R90 4 D, H Histone H2B type 1-J 9606
202 6R91 4 D, H Histone H2B type 1-J 9606
203 6R92 7 D, H Histone H2B type 1-J 9606
204 6R93 6 D, H Histone H2B type 1-J 9606
205 6R94 6 D, H Histone H2B type 1-J 9606
206 6R1U 4 D, H Histone H2B 1.1 8355
207 6R25 7 D, H H2B 8355
208 6O96 4 D, H Histone H2B 1.1 8355
209 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
210 6O1D 4 D, H Histone H2B type 1-J 9606
211 6NZO 4 D, H Histone H2B 1.1 8355
212 6J99 4 D, H Histone H2B 1.1 8355
213 6NQA 5 D, H Histone H2B 1.1 8355
214 6NOG 4 D, H Histone H2B 1.1 8355
215 6NN6 4 D, H Histone H2B 1.1 8355
216 6J4W 22 d, h Histone H2B type 1-J 9606
217 6J4X 22 d, h Histone H2B type 1-J 9606
218 6J4Y 22 d, h Histone H2B type 1-J 9606
219 6J4Z 21 d, h Histone H2B type 1-J 9606
220 6J50 21 d, h Histone H2B type 1-J 9606
221 6J51 22 d, h Histone H2B type 1-J 9606
222 6NJ9 3 D, H Histone H2B 1.1 8355
223 6I84 6 R, W Histone H2B 1.1 8355
224 6IRO 5 D, H Histone H2B 1.1 8355
225 6IR9 22 d, h Histone H2B type 1-J 9606
226 6INQ 19 d, h Histone H2B type 1-J 9606
227 6HTS 8 L, P Histone H2B type 1-J 9606
228 6E0C 4 D, H Histone H2B type 1-J 9606
229 6E0P 4 D, H Histone H2B type 1-J 9606
230 6DZT 4 D, H Histone H2B 7227
231 6A5O 19 d, h Histone H2B type 1-J 9606
232 6A5P 19 d, h Histone H2B type 1-J 9606
233 6A5R 19 d, h Histone H2B type 1-J 9606
234 6A5T 19 d, h Histone H2B type 1-J 9606
235 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
236 6A5L 19 d, h Histone H2B type 1-J 9606
237 6G0L 4 D, H Histone H4 8355
238 6FTX 4 D, H Histone H2B 8364
239 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
240 5Z3L 4 D, H Histone H2B 1.1 8355
241 5Z3O 4 D, H Histone H2B 1.1 8355
242 5Z3T 5 D, H Histone H2B 1.1 8355
243 5Z3U 5 D, H Histone H2B 1.1 8355
244 5Z3V 5 D, H Histone H2B 1.1 8355
245 6C0W 4 D, H Histone H2B 9606
246 6BUZ 4 D, H Histone H2B 9606
247 6ESF 4 D, H Histone H2B 1.1 8355
248 6ESG 4 D, H Histone H2B 1.1 8355
249 6ESH 4 D, H Histone H2B 1.1 8355
250 6ESI 4 D Histone H2B 1.1 8355
251 6ESI 5 H Histone H2B 1.1 8355
252 5O9G 4 D Histone H2B 1.1 8355
253 5O9G 5 H Histone H2B 1.1 8355
254 5X0X 4 D, H Histone H2B 1.1 8355
255 5X0Y 4 D, H Histone H2B 1.1 8355
256 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
257 2RVQ 2 D Histone H2B type 1-J 9606
258 3C9K 2 B, F Histone H2B 7 9031