Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3563
95 % 7 13 3112
90 % 8 15 2763
70 % 7 10 4437
50 % 187 259 87
40 % 187 259 101
30 % 187 259 100
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 241 37
95 % 187 263 34
90 % 194 272 37
70 % 195 271 46
50 % 195 271 82
40 % 195 271 96
30 % 195 271 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8604
95 % 165 243 46
90 % 158 226 69
70 % 161 232 77
50 % 161 232 100
40 % 161 232 116
30 % 161 232 120
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2290
95 % 130 166 110
90 % 164 235 66
70 % 172 246 65
50 % 177 253 92
40 % 177 253 105
30 % 177 253 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33470
95 % 1 3 30289
90 % 1 3 29159
70 % 1 3 26293
50 % 1 3 21338
40 % 1 3 19627
30 % 1 3 18942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 5X7X 4 D, H Histone H2B type 1-J 9606
15 5B31 4 D, H Histone H2B type 1-J 9606
16 5B1L 4 D, H Histone H2B type 3-A 10090
17 3UTB 4 D, H Histone H2B 1.1 8355
18 1M19 5 D, H Histone H2B.1 8355
19 5AVB 4 D, H Histone H2B type 1-J 9606
20 5AVC 4 D, H Histone H2B type 1-J 9606
21 5AV5 4 D, H Histone H2B type 1-J 9606
22 3C1B 4 D, H Histone 2, H2bf 8364
23 5B1M 4 D, H Histone H2B type 3-A 10090
24 5OMX 6 D, H Histone H2B 1.1 8355
25 6JR1 4 D, H Histone H2B type 1-J 9606
26 5F99 4 D, H Histone H2B 1.1 8355
27 5Z30 4 D, H Histone H2B type 1-J 9606
28 5JRG 4 D, H Histone H2B type 1-J 9606
29 3UT9 4 D, H Histone H2B 1.1 8355
30 5B32 4 D, H Histone H2B type 1-J 9606
31 4WU8 6 D, H Histone H2B 1.1 8355
32 1P3I 5 D, H Histone H2B 8355
33 3MGR 4 D, H Histone H2B 1.1 8355
34 1F66 5 D, H HISTONE H2B 8355
35 3AZG 4 D, H Histone H2B type 1-J 9606
36 1M18 5 D, H Histone H2B.1 8355
37 5B2J 4 D, H Histone H2B type 1-J 9606
38 1P3L 5 D, H Histone H2B 8355
39 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
40 5B0Y 4 D, H Histone H2B type 1-J 9606
41 6JR0 4 D, H Histone H2B type 1-J 9606
42 2CV5 5 D, H Histone H2B K 9606
43 5CP6 6 D, H Histone H2B 1.1 8355
44 5ZBX 4 D, H Histone H2B type 1-J 9606
45 5XF6 4 D, H Histone H2B 1.1 8355
46 3MGP 4 D, H Histone H2B 1.1 8355
47 3MVD 4 D, H Histone H2B 1.1 8355
48 4J8U 4 D, H Histone H2B 1.1 8355
49 4WU9 4 D, H Histone H2B 1.1 8355
50 3REH 4 D, H Histone H2B 1.1 8355
51 3AZL 4 D, H Histone H2B type 1-J 9606
52 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
53 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
54 3AFA 4 D, H Histone H2B type 1-J 9606
55 5E5A 5 D, H Histone H2B 1.1 8355
56 3REJ 4 D, H Histone H2B 1.1 8355
57 3AZF 4 D, H Histone H2B type 1-J 9606
58 5GTC 4 D, H Histone H2B type 1-J 9606
59 1P3P 5 D, H Histone H2B 8355
60 3AV1 4 D, H Histone H2B type 1-J 9606
61 1M1A 5 D, H Histone H2B.1 8355
62 5CPK 4 D, H Histone H2B type 1-J 9606
63 5AY8 4 D, H Histone H2B type 1-J 9606
64 3MNN 4 D, H Histone H2B 1.1 8355
65 1P3G 5 D, H Histone H2B 8355
66 4J8W 4 D, H Histone H2B 1.1 8355
67 1P34 5 D, H Histone H2B 8355
68 5XF3 4 D, H Histone H2B type 1-J 9606
69 5ONG 6 D, H Histone H2B 1.1 8355
70 5ONW 6 D, H Histone H2B 1.1 8355
71 5DNM 4 D, H Histone H2B 1.1 8355
72 3MGQ 4 D, H Histone H2B 1.1 8355
73 3WTP 4 D, H Histone H2B type 1-J 9606
74 2NZD 6 D, H Histone H2B 8355
75 3A6N 4 D, H Histone H2B type 1-J 9606
76 5DNN 4 D, H Histone H2B 1.1 8355
77 5GT0 4 D, H Histone H2B type 1-J 9606
78 3LJA 4 D, H Histone H2B 1.1 8355
79 3AZI 4 D, H Histone H2B type 1-J 9606
80 3TU4 4 D, H Histone H2B 1.1 8355
81 1P3O 5 D, H Histone H2B 8355
82 1KX4 5 D, H histone H2B.2 8355
83 3AZN 4 D, H Histone H2B type 1-J 9606
84 1P3M 5 D, H Histone H2B 8355
85 4J8V 4 D, H Histone H2B 1.1 8355
86 5B33 4 D, H Histone H2B type 1-J 9606
87 3X1S 4 D, H Histone H2B type 1-B 9606
88 3LZ0 4 D, H Histone H2B 1.1 8355
89 1P3F 5 D, H Histone H2B 8355
90 1P3K 5 D, H Histone H2B 8355
91 5B2I 4 D, H Histone H2B type 1-J 9606
92 1P3A 5 D, H Histone H2B 8355
93 3LZ1 4 D, H Histone H2B 1.1 8355
94 5GXQ 4 D, H Histone H2B type 1-J 9606
95 2F8N 4 D Histone 3, H2ba 10090
96 2F8N 5 H Histone H2B.1 8355
97 4Z5T 4 D, H Histone H2B type 1-J 9606
98 1U35 5 D, H histone 3, H2ba 10090
99 5XM0 4 D, H Histone H2B type 3-A 10090
100 3AV2 4 D, H Histone H2B type 1-J 9606
101 3AYW 4 D, H Histone H2B type 1-J 9606
102 5XF5 4 D, H Histone H2B type 1-J 9606
103 3AZJ 4 D, H Histone H2B type 1-J 9606
104 3REK 4 D, H Histone H2B 1.1 8355
105 4KGC 4 D, H Histone H2B 1.1 8355
106 1ZLA 5 D, H histone H2B 8355
107 5XF4 4 D, H Histone H2B type 1-J 9606
108 3REL 4 D, H Histone H2B 1.1 8355
109 5GSE 4 D, H, N Histone H2B type 1-J 9606
110 3REI 4 D, H Histone H2B 1.1 8355
111 1P3B 5 D, H Histone H2B 8355
112 3AZK 4 D, H Histone H2B type 1-J 9606
113 4J8X 4 D, H Histone H2B 1.1 8355
114 3LEL 4 D, H, N, R Histone H2B 1.1 8355
115 3KUY 4 D, H Histone H2B 8355
116 4R8P 4 D, H Histone H2B 1.1 8355
117 3AZM 4 D, H Histone H2B type 1-J 9606
118 3X1U 5 D, H Histone H2B type 1-B 9606
119 3MGS 4 D, H Histone H2B 1.1 8355
120 3WA9 4 D, H Histone H2B type 1-J 9606
121 3C1C 4 D, H Histone 2, H2bf 8364
122 3AZH 4 D, H Histone H2B type 1-J 9606
123 5B40 4 D, H Histone H2B type 1-J 9606
124 3WAA 4 D, H Histone H2B type 1-J 9606
125 5CPI 4 D, H Histone H2B type 1-J 9606
126 3W99 4 D, H Histone H2B type 1-J 9606
127 3AZE 4 D, H Histone H2B type 1-J 9606
128 3W96 4 D, H Histone H2B type 1-J 9606
129 6OM3 4 D, H, P, T Histone H2B 1.1 8355
130 5XM1 4 D, H Histone H2B type 3-A 10090
131 5CPJ 4 D, H Histone H2B type 1-J 9606
132 5B24 4 D, H Histone H2B type 1-J 9606
133 2HIO 2 B PROTEIN (HISTONE H2B) 9031
134 4LD9 4 D, H Histone H2B 1.1 8355
135 3O62 4 D, H Histone H2B 1.1 8355
136 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
137 4YM5 4 D, H Histone H2B type 1-J 9606
138 4YM6 4 D, H Histone H2B type 1-J 9606
139 2FJ7 6 D, H Histone H2B 8355
140 3W98 4 D, H Histone H2B type 1-J 9606
141 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
142 3AN2 4 D, H Histone H2B type 1-J 9606
143 3B6F 6 D, H Histone H2B 1.1 8355
144 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
145 3B6G 6 D, H Histone H2B 1.1 8355
146 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
147 3KXB 4 D, H Histone H2B 1.1 8355
148 5HQ2 4 H Histone H2B 1.1 8355
149 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
150 5OXV 2 D, H, N, R Histone H2B 1.1 8355
151 1ZBB 6 D, H, d, h Histone H2B.1 8355
152 6UPK 4 D Histone H2B 9606
153 6UPL 4 D, L Histone H2B 9606
154 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
155 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
156 6UGM 4 D Histone H2B 8355
157 6UGM 5 H Histone H2B 1.1 8355
158 6UH5 4 D Histone H2B 8355
159 6UH5 5 H Histone H2B 8355
160 6KW4 20 P, T Histone H4 8355
161 6KW3 20 P, T Histone H4 8355
162 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
163 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
164 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
165 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
166 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
167 6PX1 4 D, H Histone H2B 1.1 8355
168 6PX3 4 D, H Histone H2B 1.1 8355
169 6KIU 4 D, H Histone H2B 1.1 8355
170 6KIV 4 D, H Histone H2B 1.1 8355
171 6KIW 4 D, H Histone H2B 1.1 8355
172 6KIX 4 D, H Histone H2B 1.1 8355
173 6KIZ 4 D, H Histone H2B 1.1 8355
174 6K1P 4 D, H Histone H2B 1.1 8355
175 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
176 6JYL 4 D, H Histone H2B 1.1 8355
177 6R8Y 4 D, H Histone H2B type 1-J 9606
178 6R8Z 4 D, H Histone H2B type 1-J 9606
179 6R90 4 D, H Histone H2B type 1-J 9606
180 6R91 4 D, H Histone H2B type 1-J 9606
181 6R92 7 D, H Histone H2B type 1-J 9606
182 6R93 6 D, H Histone H2B type 1-J 9606
183 6R94 6 D, H Histone H2B type 1-J 9606
184 6R1U 4 D, H Histone H2B 1.1 8355
185 6R25 7 D, H H2B 8355
186 6O96 4 D, H Histone H2B 1.1 8355
187 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
188 6O1D 4 D, H Histone H2B type 1-J 9606
189 6NZO 4 D, H Histone H2B 1.1 8355
190 6J99 4 D, H Histone H2B 1.1 8355
191 6NQA 5 D, H Histone H2B 1.1 8355
192 6NOG 4 D, H Histone H2B 1.1 8355
193 6NN6 4 D, H Histone H2B 1.1 8355
194 6J4W 22 d, h Histone H2B type 1-J 9606
195 6J4X 22 d, h Histone H2B type 1-J 9606
196 6J4Y 22 d, h Histone H2B type 1-J 9606
197 6J4Z 21 d, h Histone H2B type 1-J 9606
198 6J50 21 d, h Histone H2B type 1-J 9606
199 6J51 22 d, h Histone H2B type 1-J 9606
200 6NJ9 3 D, H Histone H2B 1.1 8355
201 6I84 6 R, W Histone H2B 1.1 8355
202 6IRO 5 D, H Histone H2B 1.1 8355
203 6IR9 22 d, h Histone H2B type 1-J 9606
204 6INQ 19 d, h Histone H2B type 1-J 9606
205 6HTS 8 L, P Histone H2B type 1-J 9606
206 6E0C 4 D, H Histone H2B type 1-J 9606
207 6E0P 4 D, H Histone H2B type 1-J 9606
208 6A5O 19 d, h Histone H2B type 1-J 9606
209 6A5P 19 d, h Histone H2B type 1-J 9606
210 6A5R 19 d, h Histone H2B type 1-J 9606
211 6A5T 19 d, h Histone H2B type 1-J 9606
212 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
213 6A5L 19 d, h Histone H2B type 1-J 9606
214 6G0L 4 D, H Histone H4 8355
215 6FTX 4 D, H Histone H2B 8364
216 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
217 5Z3L 4 D, H Histone H2B 1.1 8355
218 5Z3O 4 D, H Histone H2B 1.1 8355
219 5Z3T 5 D, H Histone H2B 1.1 8355
220 5Z3U 5 D, H Histone H2B 1.1 8355
221 5Z3V 5 D, H Histone H2B 1.1 8355
222 6C0W 4 D, H Histone H2B 9606
223 6BUZ 4 D, H Histone H2B 9606
224 6ESF 4 D, H Histone H2B 1.1 8355
225 6ESG 4 D, H Histone H2B 1.1 8355
226 6ESH 4 D, H Histone H2B 1.1 8355
227 6ESI 4 D Histone H2B 1.1 8355
228 6ESI 5 H Histone H2B 1.1 8355
229 5O9G 4 D Histone H2B 1.1 8355
230 5O9G 5 H Histone H2B 1.1 8355
231 5X0X 4 D, H Histone H2B 1.1 8355
232 5X0Y 4 D, H Histone H2B 1.1 8355
233 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
234 2RVQ 2 D Histone H2B type 1-J 9606
235 3C9K 2 B, F Histone H2B 7 9031