Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3812
95 % 7 13 3195
90 % 8 15 2808
70 % 7 10 4500
50 % 195 271 81
40 % 195 271 96
30 % 195 271 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 253 23
95 % 195 275 34
90 % 202 284 35
70 % 203 283 46
50 % 203 283 78
40 % 203 283 93
30 % 203 283 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8750
95 % 173 255 38
90 % 166 238 66
70 % 176 253 55
50 % 183 260 88
40 % 183 260 102
30 % 183 260 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2327
95 % 136 172 103
90 % 173 248 53
70 % 181 259 53
50 % 186 266 84
40 % 186 266 100
30 % 186 266 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 36302
95 % 1 3 29273
90 % 1 3 28206
70 % 1 3 25478
50 % 1 3 22341
40 % 1 3 20457
30 % 1 3 18335

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 1S32 5 D, H Histone H2B 8355
8 5AV8 4 D, H Histone H2B type 1-J 9606
9 1KX3 5 D, H histone H2B.2 8355
10 5AV9 4 D, H Histone H2B type 1-J 9606
11 5AV6 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 6KVD 5 D, H Histone H2B type 1-J 9606
15 5X7X 4 D, H Histone H2B type 1-J 9606
16 5B31 4 D, H Histone H2B type 1-J 9606
17 5B1L 4 D, H Histone H2B type 3-A 10090
18 6K1K 4 D, H Histone H2B type 1-J 9606
19 3UTB 4 D, H Histone H2B 1.1 8355
20 1M19 5 D, H Histone H2B.1 8355
21 5AVB 4 D, H Histone H2B type 1-J 9606
22 5AVC 4 D, H Histone H2B type 1-J 9606
23 5AV5 4 D, H Histone H2B type 1-J 9606
24 3C1B 4 D, H Histone 2, H2bf 8364
25 5B1M 4 D, H Histone H2B type 3-A 10090
26 5OMX 6 D, H Histone H2B 1.1 8355
27 6JR1 4 D, H Histone H2B type 1-J 9606
28 5F99 4 D, H Histone H2B 1.1 8355
29 5Z30 4 D, H Histone H2B type 1-J 9606
30 5JRG 4 D, H Histone H2B type 1-J 9606
31 3UT9 4 D, H Histone H2B 1.1 8355
32 5B32 4 D, H Histone H2B type 1-J 9606
33 4WU8 6 D, H Histone H2B 1.1 8355
34 1P3I 5 D, H Histone H2B 8355
35 3MGR 4 D, H Histone H2B 1.1 8355
36 1F66 5 D, H HISTONE H2B 8355
37 3AZG 4 D, H Histone H2B type 1-J 9606
38 1M18 5 D, H Histone H2B.1 8355
39 5B2J 4 D, H Histone H2B type 1-J 9606
40 1P3L 5 D, H Histone H2B 8355
41 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
42 5B0Y 4 D, H Histone H2B type 1-J 9606
43 6JR0 4 D, H Histone H2B type 1-J 9606
44 2CV5 5 D, H Histone H2B K 9606
45 5CP6 6 D, H Histone H2B 1.1 8355
46 5ZBX 4 D, H Histone H2B type 1-J 9606
47 5XF6 4 D, H Histone H2B 1.1 8355
48 3MGP 4 D, H Histone H2B 1.1 8355
49 3MVD 4 D, H Histone H2B 1.1 8355
50 4J8U 4 D, H Histone H2B 1.1 8355
51 4WU9 4 D, H Histone H2B 1.1 8355
52 3REH 4 D, H Histone H2B 1.1 8355
53 3AZL 4 D, H Histone H2B type 1-J 9606
54 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
55 6N1Z 3 C, F Histone H2B 1.1 HISTONE H2B 1.1 8355
56 3AFA 4 D, H Histone H2B type 1-J 9606
57 5E5A 5 D, H Histone H2B 1.1 8355
58 3REJ 4 D, H Histone H2B 1.1 8355
59 3AZF 4 D, H Histone H2B type 1-J 9606
60 5GTC 4 D, H Histone H2B type 1-J 9606
61 1P3P 5 D, H Histone H2B 8355
62 3AV1 4 D, H Histone H2B type 1-J 9606
63 1M1A 5 D, H Histone H2B.1 8355
64 5CPK 4 D, H Histone H2B type 1-J 9606
65 5AY8 4 D, H Histone H2B type 1-J 9606
66 3MNN 4 D, H Histone H2B 1.1 8355
67 1P3G 5 D, H Histone H2B 8355
68 4J8W 4 D, H Histone H2B 1.1 8355
69 1P34 5 D, H Histone H2B 8355
70 5XF3 4 D, H Histone H2B type 1-J 9606
71 5ONG 6 D, H Histone H2B 1.1 8355
72 5ONW 6 D, H Histone H2B 1.1 8355
73 5DNM 4 D, H Histone H2B 1.1 8355
74 6K1I 4 D, H Histone H2B type 1-J 9606
75 3MGQ 4 D, H Histone H2B 1.1 8355
76 3WTP 4 D, H Histone H2B type 1-J 9606
77 2NZD 6 D, H Histone H2B 8355
78 3A6N 4 D, H Histone H2B type 1-J 9606
79 5DNN 4 D, H Histone H2B 1.1 8355
80 5GT0 4 D, H Histone H2B type 1-J 9606
81 3LJA 4 D, H Histone H2B 1.1 8355
82 3AZI 4 D, H Histone H2B type 1-J 9606
83 3TU4 4 D, H Histone H2B 1.1 8355
84 1P3O 5 D, H Histone H2B 8355
85 1KX4 5 D, H histone H2B.2 8355
86 3AZN 4 D, H Histone H2B type 1-J 9606
87 1P3M 5 D, H Histone H2B 8355
88 4J8V 4 D, H Histone H2B 1.1 8355
89 5B33 4 D, H Histone H2B type 1-J 9606
90 3X1S 4 D, H Histone H2B type 1-B 9606
91 3LZ0 4 D, H Histone H2B 1.1 8355
92 1P3F 5 D, H Histone H2B 8355
93 1P3K 5 D, H Histone H2B 8355
94 5B2I 4 D, H Histone H2B type 1-J 9606
95 1P3A 5 D, H Histone H2B 8355
96 3LZ1 4 D, H Histone H2B 1.1 8355
97 5GXQ 4 D, H Histone H2B type 1-J 9606
98 2F8N 4 D Histone 3, H2ba 10090
99 2F8N 5 H Histone H2B.1 8355
100 4Z5T 4 D, H Histone H2B type 1-J 9606
101 1U35 5 D, H histone 3, H2ba 10090
102 5XM0 4 D, H Histone H2B type 3-A 10090
103 3AV2 4 D, H Histone H2B type 1-J 9606
104 3AYW 4 D, H Histone H2B type 1-J 9606
105 5XF5 4 D, H Histone H2B type 1-J 9606
106 3AZJ 4 D, H Histone H2B type 1-J 9606
107 3REK 4 D, H Histone H2B 1.1 8355
108 4KGC 4 D, H Histone H2B 1.1 8355
109 1ZLA 5 D, H histone H2B 8355
110 5XF4 4 D, H Histone H2B type 1-J 9606
111 3REL 4 D, H Histone H2B 1.1 8355
112 5GSE 4 D, H, N Histone H2B type 1-J 9606
113 3REI 4 D, H Histone H2B 1.1 8355
114 1P3B 5 D, H Histone H2B 8355
115 3AZK 4 D, H Histone H2B type 1-J 9606
116 4J8X 4 D, H Histone H2B 1.1 8355
117 3LEL 4 D, H, N, R Histone H2B 1.1 8355
118 3KUY 4 D, H Histone H2B 8355
119 4R8P 4 D, H Histone H2B 1.1 8355
120 3AZM 4 D, H Histone H2B type 1-J 9606
121 3X1U 5 D, H Histone H2B type 1-B 9606
122 3MGS 4 D, H Histone H2B 1.1 8355
123 3WA9 4 D, H Histone H2B type 1-J 9606
124 3C1C 4 D, H Histone 2, H2bf 8364
125 3AZH 4 D, H Histone H2B type 1-J 9606
126 5B40 4 D, H Histone H2B type 1-J 9606
127 3WAA 4 D, H Histone H2B type 1-J 9606
128 5CPI 4 D, H Histone H2B type 1-J 9606
129 3W99 4 D, H Histone H2B type 1-J 9606
130 3AZE 4 D, H Histone H2B type 1-J 9606
131 3W96 4 D, H Histone H2B type 1-J 9606
132 6OM3 4 D, H, P, T Histone H2B 1.1 8355
133 5XM1 4 D, H Histone H2B type 3-A 10090
134 6K1J 4 D, H Histone H2B type 1-J 9606
135 5CPJ 4 D, H Histone H2B type 1-J 9606
136 5B24 4 D, H Histone H2B type 1-J 9606
137 2HIO 2 B PROTEIN (HISTONE H2B) 9031
138 4LD9 4 D, H Histone H2B 1.1 8355
139 3O62 4 D, H Histone H2B 1.1 8355
140 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
141 4YM5 4 D, H Histone H2B type 1-J 9606
142 4YM6 4 D, H Histone H2B type 1-J 9606
143 2FJ7 6 D, H Histone H2B 8355
144 3W98 4 D, H Histone H2B type 1-J 9606
145 4ZUX 4 D, H, N, R Histone H2B 1.1 8355
146 3AN2 4 D, H Histone H2B type 1-J 9606
147 3B6F 6 D, H Histone H2B 1.1 8355
148 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
149 3B6G 6 D, H Histone H2B 1.1 8355
150 5NL0 4 D, H, N Histone H2B 1.1 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
151 3KXB 4 D, H Histone H2B 1.1 8355
152 5HQ2 4 H Histone H2B 1.1 8355
153 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
154 5OXV 2 D, H, N, R Histone H2B 1.1 8355
155 1ZBB 6 D, H, d, h Histone H2B.1 8355
156 6LTJ 4 D, H Histone H2B 8355
157 6VEN 4 D, H Histone H2B 1.1 8355
158 6V92 26 d, h Histone H2B type 1-K 9606
159 6T9L 4 D Histone H2B 1.1 8355
160 6T9L 5 H Histone H2B 8355
161 6UPK 4 D Histone H2B 9606
162 6UPL 4 D, L Histone H2B 9606
163 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
164 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
165 6UGM 4 D Histone H2B 8355
166 6UGM 5 H Histone H2B 1.1 8355
167 6UH5 4 D Histone H2B 8355
168 6UH5 5 H Histone H2B 8355
169 6KW4 20 P, T Histone H4 8355
170 6KW3 20 P, T Histone H4 8355
171 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
172 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
173 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
174 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
175 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
176 6PX1 4 D, H Histone H2B 1.1 8355
177 6PX3 4 D, H Histone H2B 1.1 8355
178 6PWV 7 J, N Histone H2B 1.1 8355
179 6PWW 7 J, N Histone H2B 1.1 8355
180 6PWX 5 J, N Histone H2B 1.1 8355
181 6KIU 4 D, H Histone H2B 1.1 8355
182 6KIV 4 D, H Histone H2B 1.1 8355
183 6KIW 4 D, H Histone H2B 1.1 8355
184 6KIX 4 D, H Histone H2B 1.1 8355
185 6KIZ 4 D, H Histone H2B 1.1 8355
186 6S01 4 D, H Histone H2B 1.1 8355
187 6K1P 4 D, H Histone H2B 1.1 8355
188 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
189 6JYL 4 D, H Histone H2B 1.1 8355
190 6R8Y 4 D, H Histone H2B type 1-J 9606
191 6R8Z 4 D, H Histone H2B type 1-J 9606
192 6R90 4 D, H Histone H2B type 1-J 9606
193 6R91 4 D, H Histone H2B type 1-J 9606
194 6R92 7 D, H Histone H2B type 1-J 9606
195 6R93 6 D, H Histone H2B type 1-J 9606
196 6R94 6 D, H Histone H2B type 1-J 9606
197 6R1U 4 D, H Histone H2B 1.1 8355
198 6R25 7 D, H H2B 8355
199 6O96 4 D, H Histone H2B 1.1 8355
200 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
201 6O1D 4 D, H Histone H2B type 1-J 9606
202 6NZO 4 D, H Histone H2B 1.1 8355
203 6J99 4 D, H Histone H2B 1.1 8355
204 6NQA 5 D, H Histone H2B 1.1 8355
205 6NOG 4 D, H Histone H2B 1.1 8355
206 6NN6 4 D, H Histone H2B 1.1 8355
207 6J4W 22 d, h Histone H2B type 1-J 9606
208 6J4X 22 d, h Histone H2B type 1-J 9606
209 6J4Y 22 d, h Histone H2B type 1-J 9606
210 6J4Z 21 d, h Histone H2B type 1-J 9606
211 6J50 21 d, h Histone H2B type 1-J 9606
212 6J51 22 d, h Histone H2B type 1-J 9606
213 6NJ9 3 D, H Histone H2B 1.1 8355
214 6I84 6 R, W Histone H2B 1.1 8355
215 6IRO 5 D, H Histone H2B 1.1 8355
216 6IR9 22 d, h Histone H2B type 1-J 9606
217 6INQ 19 d, h Histone H2B type 1-J 9606
218 6HTS 8 L, P Histone H2B type 1-J 9606
219 6E0C 4 D, H Histone H2B type 1-J 9606
220 6E0P 4 D, H Histone H2B type 1-J 9606
221 6A5O 19 d, h Histone H2B type 1-J 9606
222 6A5P 19 d, h Histone H2B type 1-J 9606
223 6A5R 19 d, h Histone H2B type 1-J 9606
224 6A5T 19 d, h Histone H2B type 1-J 9606
225 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
226 6A5L 19 d, h Histone H2B type 1-J 9606
227 6G0L 4 D, H Histone H4 8355
228 6FTX 4 D, H Histone H2B 8364
229 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
230 5Z3L 4 D, H Histone H2B 1.1 8355
231 5Z3O 4 D, H Histone H2B 1.1 8355
232 5Z3T 5 D, H Histone H2B 1.1 8355
233 5Z3U 5 D, H Histone H2B 1.1 8355
234 5Z3V 5 D, H Histone H2B 1.1 8355
235 6C0W 4 D, H Histone H2B 9606
236 6BUZ 4 D, H Histone H2B 9606
237 6ESF 4 D, H Histone H2B 1.1 8355
238 6ESG 4 D, H Histone H2B 1.1 8355
239 6ESH 4 D, H Histone H2B 1.1 8355
240 6ESI 4 D Histone H2B 1.1 8355
241 6ESI 5 H Histone H2B 1.1 8355
242 5O9G 4 D Histone H2B 1.1 8355
243 5O9G 5 H Histone H2B 1.1 8355
244 5X0X 4 D, H Histone H2B 1.1 8355
245 5X0Y 4 D, H Histone H2B 1.1 8355
246 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
247 2RVQ 2 D Histone H2B type 1-J 9606
248 3C9K 2 B, F Histone H2B 7 9031