6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3748
95 % 8 14 3221
90 % 9 16 2860
70 % 8 11 4479
50 % 240 318 65
40 % 240 318 86
30 % 240 318 94
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 220 299 9
95 % 242 324 17
90 % 249 333 19
70 % 250 332 25
50 % 250 332 58
40 % 250 332 78
30 % 250 332 81
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 6007
95 % 215 299 19
90 % 198 272 45
70 % 211 290 39
50 % 224 303 69
40 % 224 303 91
30 % 224 303 97
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 19 1606
95 % 169 205 75
90 % 217 294 24
70 % 225 305 31
50 % 230 312 67
40 % 230 312 88
30 % 230 312 95
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 38502
95 % 1 3 30652
90 % 1 3 30153
70 % 1 3 26588
50 % 1 3 23321
40 % 1 3 21317
30 % 1 3 20315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 5AV8 4 D, H Histone H2B type 1-J 9606
8 1KX3 5 D, H histone H2B.2 8355
9 5AV9 4 D, H Histone H2B type 1-J 9606
10 5AV6 4 D, H Histone H2B type 1-J 9606
11 6JOU 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 6KVD 5 D, H Histone H2B type 1-J 9606
15 5X7X 4 D, H Histone H2B type 1-J 9606
16 5B31 4 D, H Histone H2B type 1-J 9606
17 6K1K 4 D, H Histone H2B type 1-J 9606
18 3UTB 4 D, H Histone H2B 1.1 8355
19 1M19 5 D, H Histone H2B.1 8355
20 5AVB 4 D, H Histone H2B type 1-J 9606
21 5AVC 4 D, H Histone H2B type 1-J 9606
22 5AV5 4 D, H Histone H2B type 1-J 9606
23 6JR1 4 D, H Histone H2B type 1-J 9606
24 5Z30 4 D, H Histone H2B type 1-J 9606
25 5JRG 4 D, H Histone H2B type 1-J 9606
26 3UT9 4 D, H Histone H2B 1.1 8355
27 5B32 4 D, H Histone H2B type 1-J 9606
28 4WU8 6 D, H Histone H2B 1.1 8355
29 1P3I 5 D, H Histone H2B 8355
30 3MGR 4 D, H Histone H2B 1.1 8355
31 1F66 5 D, H HISTONE H2B 8355
32 3AZG 4 D, H Histone H2B type 1-J 9606
33 1M18 5 D, H Histone H2B.1 8355
34 5B2J 4 D, H Histone H2B type 1-J 9606
35 6V2K 4 D, H Histone H2B type 1-J 9606
36 1P3L 5 D, H Histone H2B 8355
37 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
38 5B0Y 4 D, H Histone H2B type 1-J 9606
39 6JR0 4 D, H Histone H2B type 1-J 9606
40 2CV5 5 D, H Histone H2B K 9606
41 5CP6 6 D, H Histone H2B 1.1 8355
42 5ZBX 4 D, H Histone H2B type 1-J 9606
43 5XF6 4 D, H Histone H2B 1.1 8355
44 3MGP 4 D, H Histone H2B 1.1 8355
45 4J8U 4 D, H Histone H2B 1.1 8355
46 4WU9 4 D, H Histone H2B 1.1 8355
47 3AZL 4 D, H Histone H2B type 1-J 9606
48 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
49 3AFA 4 D, H Histone H2B type 1-J 9606
50 3AZF 4 D, H Histone H2B type 1-J 9606
51 5GTC 4 D, H Histone H2B type 1-J 9606
52 1P3P 5 D, H Histone H2B 8355
53 3AV1 4 D, H Histone H2B type 1-J 9606
54 1M1A 5 D, H Histone H2B.1 8355
55 5CPK 4 D, H Histone H2B type 1-J 9606
56 5AY8 4 D, H Histone H2B type 1-J 9606
57 3MNN 4 D, H Histone H2B 1.1 8355
58 1P3G 5 D, H Histone H2B 8355
59 4J8W 4 D, H Histone H2B 1.1 8355
60 1P34 5 D, H Histone H2B 8355
61 5XF3 4 D, H Histone H2B type 1-J 9606
62 5DNM 4 D, H Histone H2B 1.1 8355
63 6K1I 4 D, H Histone H2B type 1-J 9606
64 3MGQ 4 D, H Histone H2B 1.1 8355
65 3WTP 4 D, H Histone H2B type 1-J 9606
66 2NZD 6 D, H Histone H2B 8355
67 3A6N 4 D, H Histone H2B type 1-J 9606
68 5DNN 4 D, H Histone H2B 1.1 8355
69 5GT0 4 D, H Histone H2B type 1-J 9606
70 3AZI 4 D, H Histone H2B type 1-J 9606
71 1P3O 5 D, H Histone H2B 8355
72 1KX4 5 D, H histone H2B.2 8355
73 3AZN 4 D, H Histone H2B type 1-J 9606
74 1P3M 5 D, H Histone H2B 8355
75 4J8V 4 D, H Histone H2B 1.1 8355
76 5B33 4 D, H Histone H2B type 1-J 9606
77 3X1S 4 D, H Histone H2B type 1-B 9606
78 3LZ0 4 D, H Histone H2B 1.1 8355
79 1P3F 5 D, H Histone H2B 8355
80 1P3K 5 D, H Histone H2B 8355
81 5B2I 4 D, H Histone H2B type 1-J 9606
82 1P3A 5 D, H Histone H2B 8355
83 3LZ1 4 D, H Histone H2B 1.1 8355
84 5GXQ 4 D, H Histone H2B type 1-J 9606
85 4Z5T 4 D, H Histone H2B type 1-J 9606
86 3AV2 4 D, H Histone H2B type 1-J 9606
87 3AYW 4 D, H Histone H2B type 1-J 9606
88 5XF5 4 D, H Histone H2B type 1-J 9606
89 3AZJ 4 D, H Histone H2B type 1-J 9606
90 4KGC 4 D, H Histone H2B 1.1 8355
91 5XF4 4 D, H Histone H2B type 1-J 9606
92 5GSE 4 D, H, N Histone H2B type 1-J 9606
93 1P3B 5 D, H Histone H2B 8355
94 3AZK 4 D, H Histone H2B type 1-J 9606
95 4J8X 4 D, H Histone H2B 1.1 8355
96 3LEL 4 D, H, N, R Histone H2B 1.1 8355
97 3KUY 4 D, H Histone H2B 8355
98 3AZM 4 D, H Histone H2B type 1-J 9606
99 3X1U 5 D, H Histone H2B type 1-B 9606
100 3MGS 4 D, H Histone H2B 1.1 8355
101 3WA9 4 D, H Histone H2B type 1-J 9606
102 3AZH 4 D, H Histone H2B type 1-J 9606
103 5B40 4 D, H Histone H2B type 1-J 9606
104 3WAA 4 D, H Histone H2B type 1-J 9606
105 5CPI 4 D, H Histone H2B type 1-J 9606
106 3W99 4 D, H Histone H2B type 1-J 9606
107 3AZE 4 D, H Histone H2B type 1-J 9606
108 6LA8 4 D, H, N, R Histone H2B type 1-J 9606
109 3W96 4 D, H Histone H2B type 1-J 9606
110 6OM3 4 D, H, P, T Histone H2B 1.1 8355
111 6K1J 4 D, H Histone H2B type 1-J 9606
112 5CPJ 4 D, H Histone H2B type 1-J 9606
113 6LA9 4 D, H, N, R Histone H2B type 1-J 9606
114 5B24 4 D, H Histone H2B type 1-J 9606
115 2HIO 2 B PROTEIN (HISTONE H2B) 9031
116 4LD9 4 D, H Histone H2B 1.1 8355
117 6M44 4 D, H, N, R Histone H2B type 1-J 9606
118 6KXV 4 D, H Histone H2B type 1-J 9606
119 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
120 4YM5 4 D, H Histone H2B type 1-J 9606
121 4YM6 4 D, H Histone H2B type 1-J 9606
122 2FJ7 6 D, H Histone H2B 8355
123 3W98 4 D, H Histone H2B type 1-J 9606
124 6M3V 4 D, H, N, R Histone H2B type 1-J 9606
125 3AN2 4 D, H Histone H2B type 1-J 9606
126 3B6F 6 D, H Histone H2B 1.1 8355
127 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
128 3B6G 6 D, H Histone H2B 1.1 8355
129 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
130 5OXV 2 D, H, N, R Histone H2B 1.1 8355
131 1ZBB 6 D, H, d, h Histone H2B.1 8355
132 7K63 4 D, H Histone H2B type 1-J 9606
133 7K5X 4 D, H Histone H2B type 1-J 9606
134 7K5Y 4 D, H Histone H2B type 1-J 9606
135 7K60 4 D, H Histone H2B type 1-J 9606
136 7K61 4 D, H Histone H2B type 1-J 9606
137 7A08 5 c, g Histone H2B type 1-C/E/F/G/I 9606
138 7JO9 4 D, H Histone H2B type 1-C/E/F/G/I 9606
139 7JOA 4 D, H Histone H2B type 1-C/E/F/G/I 9606
140 6XJD 4 D, H Histone H2B type 1-C/E/F/G/I 9606
141 6X59 4 D, H Histone H2B type 1-C/E/F/G/I 9606
142 6X5A 4 D, H Histone H2B type 1-C/E/F/G/I 9606
143 7C0M 4 D, H, d, h Histone H2B type 1-J 9606
144 6YOV 4 D, H Histone H2B type 1-J 9606
145 6M4H 6 D, H Histone H2B type 2-E 9606
146 6M4D 4 D, H Histone H2B type 2-E 9606
147 6M4G 5 D, H Histone H2B type 2-E 9606
148 6Y5D 4 D, H, P, T Histone H2B type 1-K 9606
149 6V92 26 d, h Histone H2B type 1-K 9606
150 6TEM 4 D, H Histone H2B 1.1 8355
151 6T9L 5 H Histone H2B 8355
152 6USJ 6 D, H, N, R Histone H2B type 1-J 9606
153 6T90 4 D, H Histone H2B type 1-J 9606
154 6T93 4 D, H Histone H2B type 1-J 9606
155 6T79 4 D, H Histone H2B type 1-K 9606
156 6T7A 4 D, H Histone H2B type 1-K 9606
157 6T7B 4 D, H Histone H2B type 1-K 9606
158 6T7C 4 D, H Histone H2B type 1-K 9606
159 6T7D 4 D, H Histone H2B type 1-K 9606
160 6UPK 4 D Histone H2B 9606
161 6UPL 4 D, L Histone H2B 9606
162 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
163 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
164 6UGM 4 D Histone H2B 8355
165 6UGM 5 H Histone H2B 1.1 8355
166 6UH5 4 D Histone H2B 8355
167 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
168 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
169 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
170 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
171 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
172 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
173 6R8Y 4 D, H Histone H2B type 1-J 9606
174 6R8Z 4 D, H Histone H2B type 1-J 9606
175 6R90 4 D, H Histone H2B type 1-J 9606
176 6R91 4 D, H Histone H2B type 1-J 9606
177 6R92 7 D, H Histone H2B type 1-J 9606
178 6R93 6 D, H Histone H2B type 1-J 9606
179 6R94 6 D, H Histone H2B type 1-J 9606
180 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
181 6O1D 4 D, H Histone H2B type 1-J 9606
182 6J4W 22 d, h Histone H2B type 1-J 9606
183 6J4X 22 d, h Histone H2B type 1-J 9606
184 6J4Y 22 d, h Histone H2B type 1-J 9606
185 6J4Z 21 d, h Histone H2B type 1-J 9606
186 6J50 21 d, h Histone H2B type 1-J 9606
187 6J51 22 d, h Histone H2B type 1-J 9606
188 6IR9 22 d, h Histone H2B type 1-J 9606
189 6INQ 19 d, h Histone H2B type 1-J 9606
190 6HTS 8 L, P Histone H2B type 1-J 9606
191 6E0C 4 D, H Histone H2B type 1-J 9606
192 6E0P 4 D, H Histone H2B type 1-J 9606
193 6A5O 19 d, h Histone H2B type 1-J 9606
194 6A5P 19 d, h Histone H2B type 1-J 9606
195 6A5R 19 d, h Histone H2B type 1-J 9606
196 6A5T 19 d, h Histone H2B type 1-J 9606
197 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
198 6A5L 19 d, h Histone H2B type 1-J 9606
199 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
200 6C0W 4 D, H Histone H2B 9606
201 6BUZ 4 D, H Histone H2B 9606
202 5X0X 4 D, H Histone H2B 1.1 8355
203 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
204 2RVQ 2 D Histone H2B type 1-J 9606
205 3C9K 2 B, F Histone H2B 7 9031