Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3681
95 % 7 13 3282
90 % 8 15 2830
70 % 7 10 4634
50 % 193 269 81
40 % 193 269 99
30 % 193 269 98
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 251 24
95 % 193 273 33
90 % 200 282 36
70 % 201 281 46
50 % 201 281 78
40 % 201 281 96
30 % 201 281 94
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8485
95 % 171 253 37
90 % 164 236 65
70 % 174 251 58
50 % 181 258 88
40 % 181 258 104
30 % 181 258 104
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2309
95 % 135 171 103
90 % 170 245 63
70 % 178 256 54
50 % 178 256 90
40 % 178 256 106
30 % 178 256 107
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33709
95 % 1 3 27945
90 % 1 3 29298
70 % 1 3 24592
50 % 1 3 23296
40 % 1 3 21290
30 % 1 3 17574

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 5AV8 4 D, H Histone H2B type 1-J 9606
8 1KX3 5 D, H histone H2B.2 8355
9 5AV9 4 D, H Histone H2B type 1-J 9606
10 5AV6 4 D, H Histone H2B type 1-J 9606
11 1HQ3 2 B, F HISTONE H2B 9031
12 3UTA 4 D, H Histone H2B 1.1 8355
13 6KVD 5 D, H Histone H2B type 1-J 9606
14 5X7X 4 D, H Histone H2B type 1-J 9606
15 5B31 4 D, H Histone H2B type 1-J 9606
16 6K1K 4 D, H Histone H2B type 1-J 9606
17 3UTB 4 D, H Histone H2B 1.1 8355
18 1M19 5 D, H Histone H2B.1 8355
19 5AVB 4 D, H Histone H2B type 1-J 9606
20 5AVC 4 D, H Histone H2B type 1-J 9606
21 5AV5 4 D, H Histone H2B type 1-J 9606
22 6JR1 4 D, H Histone H2B type 1-J 9606
23 5Z30 4 D, H Histone H2B type 1-J 9606
24 5JRG 4 D, H Histone H2B type 1-J 9606
25 3UT9 4 D, H Histone H2B 1.1 8355
26 5B32 4 D, H Histone H2B type 1-J 9606
27 4WU8 6 D, H Histone H2B 1.1 8355
28 1P3I 5 D, H Histone H2B 8355
29 3MGR 4 D, H Histone H2B 1.1 8355
30 1F66 5 D, H HISTONE H2B 8355
31 3AZG 4 D, H Histone H2B type 1-J 9606
32 1M18 5 D, H Histone H2B.1 8355
33 5B2J 4 D, H Histone H2B type 1-J 9606
34 1P3L 5 D, H Histone H2B 8355
35 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
36 5B0Y 4 D, H Histone H2B type 1-J 9606
37 6JR0 4 D, H Histone H2B type 1-J 9606
38 2CV5 5 D, H Histone H2B K 9606
39 5CP6 6 D, H Histone H2B 1.1 8355
40 5ZBX 4 D, H Histone H2B type 1-J 9606
41 5XF6 4 D, H Histone H2B 1.1 8355
42 3MGP 4 D, H Histone H2B 1.1 8355
43 4J8U 4 D, H Histone H2B 1.1 8355
44 4WU9 4 D, H Histone H2B 1.1 8355
45 3AZL 4 D, H Histone H2B type 1-J 9606
46 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
47 3AFA 4 D, H Histone H2B type 1-J 9606
48 3AZF 4 D, H Histone H2B type 1-J 9606
49 5GTC 4 D, H Histone H2B type 1-J 9606
50 1P3P 5 D, H Histone H2B 8355
51 3AV1 4 D, H Histone H2B type 1-J 9606
52 1M1A 5 D, H Histone H2B.1 8355
53 5CPK 4 D, H Histone H2B type 1-J 9606
54 5AY8 4 D, H Histone H2B type 1-J 9606
55 3MNN 4 D, H Histone H2B 1.1 8355
56 1P3G 5 D, H Histone H2B 8355
57 4J8W 4 D, H Histone H2B 1.1 8355
58 1P34 5 D, H Histone H2B 8355
59 5XF3 4 D, H Histone H2B type 1-J 9606
60 5DNM 4 D, H Histone H2B 1.1 8355
61 6K1I 4 D, H Histone H2B type 1-J 9606
62 3MGQ 4 D, H Histone H2B 1.1 8355
63 3WTP 4 D, H Histone H2B type 1-J 9606
64 2NZD 6 D, H Histone H2B 8355
65 3A6N 4 D, H Histone H2B type 1-J 9606
66 5DNN 4 D, H Histone H2B 1.1 8355
67 5GT0 4 D, H Histone H2B type 1-J 9606
68 3AZI 4 D, H Histone H2B type 1-J 9606
69 1P3O 5 D, H Histone H2B 8355
70 1KX4 5 D, H histone H2B.2 8355
71 3AZN 4 D, H Histone H2B type 1-J 9606
72 1P3M 5 D, H Histone H2B 8355
73 4J8V 4 D, H Histone H2B 1.1 8355
74 5B33 4 D, H Histone H2B type 1-J 9606
75 3X1S 4 D, H Histone H2B type 1-B 9606
76 3LZ0 4 D, H Histone H2B 1.1 8355
77 1P3F 5 D, H Histone H2B 8355
78 1P3K 5 D, H Histone H2B 8355
79 5B2I 4 D, H Histone H2B type 1-J 9606
80 1P3A 5 D, H Histone H2B 8355
81 3LZ1 4 D, H Histone H2B 1.1 8355
82 5GXQ 4 D, H Histone H2B type 1-J 9606
83 4Z5T 4 D, H Histone H2B type 1-J 9606
84 3AV2 4 D, H Histone H2B type 1-J 9606
85 3AYW 4 D, H Histone H2B type 1-J 9606
86 5XF5 4 D, H Histone H2B type 1-J 9606
87 3AZJ 4 D, H Histone H2B type 1-J 9606
88 4KGC 4 D, H Histone H2B 1.1 8355
89 5XF4 4 D, H Histone H2B type 1-J 9606
90 5GSE 4 D, H, N Histone H2B type 1-J 9606
91 1P3B 5 D, H Histone H2B 8355
92 3AZK 4 D, H Histone H2B type 1-J 9606
93 4J8X 4 D, H Histone H2B 1.1 8355
94 3LEL 4 D, H, N, R Histone H2B 1.1 8355
95 3KUY 4 D, H Histone H2B 8355
96 3AZM 4 D, H Histone H2B type 1-J 9606
97 3X1U 5 D, H Histone H2B type 1-B 9606
98 3MGS 4 D, H Histone H2B 1.1 8355
99 3WA9 4 D, H Histone H2B type 1-J 9606
100 3AZH 4 D, H Histone H2B type 1-J 9606
101 5B40 4 D, H Histone H2B type 1-J 9606
102 3WAA 4 D, H Histone H2B type 1-J 9606
103 5CPI 4 D, H Histone H2B type 1-J 9606
104 3W99 4 D, H Histone H2B type 1-J 9606
105 3AZE 4 D, H Histone H2B type 1-J 9606
106 3W96 4 D, H Histone H2B type 1-J 9606
107 6OM3 4 D, H, P, T Histone H2B 1.1 8355
108 6K1J 4 D, H Histone H2B type 1-J 9606
109 5CPJ 4 D, H Histone H2B type 1-J 9606
110 5B24 4 D, H Histone H2B type 1-J 9606
111 2HIO 2 B PROTEIN (HISTONE H2B) 9031
112 4LD9 4 D, H Histone H2B 1.1 8355
113 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
114 4YM5 4 D, H Histone H2B type 1-J 9606
115 4YM6 4 D, H Histone H2B type 1-J 9606
116 2FJ7 6 D, H Histone H2B 8355
117 3W98 4 D, H Histone H2B type 1-J 9606
118 3AN2 4 D, H Histone H2B type 1-J 9606
119 3B6F 6 D, H Histone H2B 1.1 8355
120 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
121 3B6G 6 D, H Histone H2B 1.1 8355
122 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
123 5OXV 2 D, H, N, R Histone H2B 1.1 8355
124 1ZBB 6 D, H, d, h Histone H2B.1 8355
125 6V92 26 d, h Histone H2B type 1-K 9606
126 6UPK 4 D Histone H2B 9606
127 6UPL 4 D, L Histone H2B 9606
128 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
129 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
130 6UGM 4 D Histone H2B 8355
131 6UGM 5 H Histone H2B 1.1 8355
132 6UH5 4 D Histone H2B 8355
133 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
134 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
135 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
136 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
137 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
138 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
139 6R8Y 4 D, H Histone H2B type 1-J 9606
140 6R8Z 4 D, H Histone H2B type 1-J 9606
141 6R90 4 D, H Histone H2B type 1-J 9606
142 6R91 4 D, H Histone H2B type 1-J 9606
143 6R92 7 D, H Histone H2B type 1-J 9606
144 6R93 6 D, H Histone H2B type 1-J 9606
145 6R94 6 D, H Histone H2B type 1-J 9606
146 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
147 6O1D 4 D, H Histone H2B type 1-J 9606
148 6J4W 22 d, h Histone H2B type 1-J 9606
149 6J4X 22 d, h Histone H2B type 1-J 9606
150 6J4Y 22 d, h Histone H2B type 1-J 9606
151 6J4Z 21 d, h Histone H2B type 1-J 9606
152 6J50 21 d, h Histone H2B type 1-J 9606
153 6J51 22 d, h Histone H2B type 1-J 9606
154 6IR9 22 d, h Histone H2B type 1-J 9606
155 6INQ 19 d, h Histone H2B type 1-J 9606
156 6HTS 8 L, P Histone H2B type 1-J 9606
157 6E0C 4 D, H Histone H2B type 1-J 9606
158 6E0P 4 D, H Histone H2B type 1-J 9606
159 6A5O 19 d, h Histone H2B type 1-J 9606
160 6A5P 19 d, h Histone H2B type 1-J 9606
161 6A5R 19 d, h Histone H2B type 1-J 9606
162 6A5T 19 d, h Histone H2B type 1-J 9606
163 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
164 6A5L 19 d, h Histone H2B type 1-J 9606
165 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
166 6C0W 4 D, H Histone H2B 9606
167 6BUZ 4 D, H Histone H2B 9606
168 5X0X 4 D, H Histone H2B 1.1 8355
169 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
170 2RVQ 2 D Histone H2B type 1-J 9606
171 3C9K 2 B, F Histone H2B 7 9031