6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3439
95 % 8 14 3116
90 % 9 16 2743
70 % 8 11 4353
50 % 211 289 81
40 % 211 289 97
30 % 211 289 97
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 269 20
95 % 212 294 26
90 % 219 303 20
70 % 220 302 34
50 % 220 302 74
40 % 220 302 91
30 % 220 302 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 9196
95 % 184 268 38
90 % 171 245 68
70 % 184 263 53
50 % 197 276 85
40 % 197 276 102
30 % 197 276 101
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2490
95 % 147 183 87
90 % 187 264 45
70 % 195 275 51
50 % 200 282 83
40 % 200 282 100
30 % 200 282 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 37832
95 % 1 3 30423
90 % 1 3 29331
70 % 1 3 26400
50 % 1 3 23124
40 % 1 3 21140
30 % 1 3 18933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 5AV8 4 D, H Histone H2B type 1-J 9606
8 1KX3 5 D, H histone H2B.2 8355
9 5AV9 4 D, H Histone H2B type 1-J 9606
10 5AV6 4 D, H Histone H2B type 1-J 9606
11 6JOU 4 D, H Histone H2B type 1-J 9606
12 1HQ3 2 B, F HISTONE H2B 9031
13 3UTA 4 D, H Histone H2B 1.1 8355
14 6KVD 5 D, H Histone H2B type 1-J 9606
15 5X7X 4 D, H Histone H2B type 1-J 9606
16 5B31 4 D, H Histone H2B type 1-J 9606
17 6K1K 4 D, H Histone H2B type 1-J 9606
18 3UTB 4 D, H Histone H2B 1.1 8355
19 1M19 5 D, H Histone H2B.1 8355
20 5AVB 4 D, H Histone H2B type 1-J 9606
21 5AVC 4 D, H Histone H2B type 1-J 9606
22 5AV5 4 D, H Histone H2B type 1-J 9606
23 6JR1 4 D, H Histone H2B type 1-J 9606
24 5Z30 4 D, H Histone H2B type 1-J 9606
25 5JRG 4 D, H Histone H2B type 1-J 9606
26 3UT9 4 D, H Histone H2B 1.1 8355
27 5B32 4 D, H Histone H2B type 1-J 9606
28 4WU8 6 D, H Histone H2B 1.1 8355
29 1P3I 5 D, H Histone H2B 8355
30 3MGR 4 D, H Histone H2B 1.1 8355
31 1F66 5 D, H HISTONE H2B 8355
32 3AZG 4 D, H Histone H2B type 1-J 9606
33 1M18 5 D, H Histone H2B.1 8355
34 5B2J 4 D, H Histone H2B type 1-J 9606
35 1P3L 5 D, H Histone H2B 8355
36 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
37 5B0Y 4 D, H Histone H2B type 1-J 9606
38 6JR0 4 D, H Histone H2B type 1-J 9606
39 2CV5 5 D, H Histone H2B K 9606
40 5CP6 6 D, H Histone H2B 1.1 8355
41 5ZBX 4 D, H Histone H2B type 1-J 9606
42 5XF6 4 D, H Histone H2B 1.1 8355
43 3MGP 4 D, H Histone H2B 1.1 8355
44 4J8U 4 D, H Histone H2B 1.1 8355
45 4WU9 4 D, H Histone H2B 1.1 8355
46 3AZL 4 D, H Histone H2B type 1-J 9606
47 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
48 3AFA 4 D, H Histone H2B type 1-J 9606
49 3AZF 4 D, H Histone H2B type 1-J 9606
50 5GTC 4 D, H Histone H2B type 1-J 9606
51 1P3P 5 D, H Histone H2B 8355
52 3AV1 4 D, H Histone H2B type 1-J 9606
53 1M1A 5 D, H Histone H2B.1 8355
54 5CPK 4 D, H Histone H2B type 1-J 9606
55 5AY8 4 D, H Histone H2B type 1-J 9606
56 3MNN 4 D, H Histone H2B 1.1 8355
57 1P3G 5 D, H Histone H2B 8355
58 4J8W 4 D, H Histone H2B 1.1 8355
59 1P34 5 D, H Histone H2B 8355
60 5XF3 4 D, H Histone H2B type 1-J 9606
61 5DNM 4 D, H Histone H2B 1.1 8355
62 6K1I 4 D, H Histone H2B type 1-J 9606
63 3MGQ 4 D, H Histone H2B 1.1 8355
64 3WTP 4 D, H Histone H2B type 1-J 9606
65 2NZD 6 D, H Histone H2B 8355
66 3A6N 4 D, H Histone H2B type 1-J 9606
67 5DNN 4 D, H Histone H2B 1.1 8355
68 5GT0 4 D, H Histone H2B type 1-J 9606
69 3AZI 4 D, H Histone H2B type 1-J 9606
70 1P3O 5 D, H Histone H2B 8355
71 1KX4 5 D, H histone H2B.2 8355
72 3AZN 4 D, H Histone H2B type 1-J 9606
73 1P3M 5 D, H Histone H2B 8355
74 4J8V 4 D, H Histone H2B 1.1 8355
75 5B33 4 D, H Histone H2B type 1-J 9606
76 3X1S 4 D, H Histone H2B type 1-B 9606
77 3LZ0 4 D, H Histone H2B 1.1 8355
78 1P3F 5 D, H Histone H2B 8355
79 1P3K 5 D, H Histone H2B 8355
80 5B2I 4 D, H Histone H2B type 1-J 9606
81 1P3A 5 D, H Histone H2B 8355
82 3LZ1 4 D, H Histone H2B 1.1 8355
83 5GXQ 4 D, H Histone H2B type 1-J 9606
84 4Z5T 4 D, H Histone H2B type 1-J 9606
85 3AV2 4 D, H Histone H2B type 1-J 9606
86 3AYW 4 D, H Histone H2B type 1-J 9606
87 5XF5 4 D, H Histone H2B type 1-J 9606
88 3AZJ 4 D, H Histone H2B type 1-J 9606
89 4KGC 4 D, H Histone H2B 1.1 8355
90 5XF4 4 D, H Histone H2B type 1-J 9606
91 5GSE 4 D, H, N Histone H2B type 1-J 9606
92 1P3B 5 D, H Histone H2B 8355
93 3AZK 4 D, H Histone H2B type 1-J 9606
94 4J8X 4 D, H Histone H2B 1.1 8355
95 3LEL 4 D, H, N, R Histone H2B 1.1 8355
96 3KUY 4 D, H Histone H2B 8355
97 3AZM 4 D, H Histone H2B type 1-J 9606
98 3X1U 5 D, H Histone H2B type 1-B 9606
99 3MGS 4 D, H Histone H2B 1.1 8355
100 3WA9 4 D, H Histone H2B type 1-J 9606
101 3AZH 4 D, H Histone H2B type 1-J 9606
102 5B40 4 D, H Histone H2B type 1-J 9606
103 3WAA 4 D, H Histone H2B type 1-J 9606
104 5CPI 4 D, H Histone H2B type 1-J 9606
105 3W99 4 D, H Histone H2B type 1-J 9606
106 3AZE 4 D, H Histone H2B type 1-J 9606
107 3W96 4 D, H Histone H2B type 1-J 9606
108 6OM3 4 D, H, P, T Histone H2B 1.1 8355
109 6K1J 4 D, H Histone H2B type 1-J 9606
110 5CPJ 4 D, H Histone H2B type 1-J 9606
111 5B24 4 D, H Histone H2B type 1-J 9606
112 2HIO 2 B PROTEIN (HISTONE H2B) 9031
113 4LD9 4 D, H Histone H2B 1.1 8355
114 6KXV 4 D, H Histone H2B type 1-J 9606
115 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
116 4YM5 4 D, H Histone H2B type 1-J 9606
117 4YM6 4 D, H Histone H2B type 1-J 9606
118 2FJ7 6 D, H Histone H2B 8355
119 3W98 4 D, H Histone H2B type 1-J 9606
120 3AN2 4 D, H Histone H2B type 1-J 9606
121 3B6F 6 D, H Histone H2B 1.1 8355
122 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
123 3B6G 6 D, H Histone H2B 1.1 8355
124 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
125 5OXV 2 D, H, N, R Histone H2B 1.1 8355
126 1ZBB 6 D, H, d, h Histone H2B.1 8355
127 6YOV 4 D, H Histone H2B type 1-J 9606
128 6V92 26 d, h Histone H2B type 1-K 9606
129 6TEM 4 D, H Histone H2B 1.1 8355
130 6T9L 5 H Histone H2B 8355
131 6T90 4 D, H Histone H2B type 1-J 9606
132 6T93 4 D, H Histone H2B type 1-J 9606
133 6T79 4 D, H Histone H2B type 1-K 9606
134 6T7A 4 D, H Histone H2B type 1-K 9606
135 6T7B 4 D, H Histone H2B type 1-K 9606
136 6T7C 4 D, H Histone H2B type 1-K 9606
137 6T7D 4 D, H Histone H2B type 1-K 9606
138 6UPK 4 D Histone H2B 9606
139 6UPL 4 D, L Histone H2B 9606
140 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
141 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
142 6UGM 4 D Histone H2B 8355
143 6UGM 5 H Histone H2B 1.1 8355
144 6UH5 4 D Histone H2B 8355
145 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
146 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
147 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
148 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
149 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
150 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
151 6R8Y 4 D, H Histone H2B type 1-J 9606
152 6R8Z 4 D, H Histone H2B type 1-J 9606
153 6R90 4 D, H Histone H2B type 1-J 9606
154 6R91 4 D, H Histone H2B type 1-J 9606
155 6R92 7 D, H Histone H2B type 1-J 9606
156 6R93 6 D, H Histone H2B type 1-J 9606
157 6R94 6 D, H Histone H2B type 1-J 9606
158 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
159 6O1D 4 D, H Histone H2B type 1-J 9606
160 6J4W 22 d, h Histone H2B type 1-J 9606
161 6J4X 22 d, h Histone H2B type 1-J 9606
162 6J4Y 22 d, h Histone H2B type 1-J 9606
163 6J4Z 21 d, h Histone H2B type 1-J 9606
164 6J50 21 d, h Histone H2B type 1-J 9606
165 6J51 22 d, h Histone H2B type 1-J 9606
166 6IR9 22 d, h Histone H2B type 1-J 9606
167 6INQ 19 d, h Histone H2B type 1-J 9606
168 6HTS 8 L, P Histone H2B type 1-J 9606
169 6E0C 4 D, H Histone H2B type 1-J 9606
170 6E0P 4 D, H Histone H2B type 1-J 9606
171 6A5O 19 d, h Histone H2B type 1-J 9606
172 6A5P 19 d, h Histone H2B type 1-J 9606
173 6A5R 19 d, h Histone H2B type 1-J 9606
174 6A5T 19 d, h Histone H2B type 1-J 9606
175 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
176 6A5L 19 d, h Histone H2B type 1-J 9606
177 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
178 6C0W 4 D, H Histone H2B 9606
179 6BUZ 4 D, H Histone H2B 9606
180 5X0X 4 D, H Histone H2B 1.1 8355
181 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
182 2RVQ 2 D Histone H2B type 1-J 9606
183 3C9K 2 B, F Histone H2B 7 9031