Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3552
95 % 7 13 3104
90 % 8 15 2749
70 % 7 10 4419
50 % 185 257 87
40 % 185 257 104
30 % 185 257 103
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 239 37
95 % 185 261 34
90 % 192 270 37
70 % 193 269 44
50 % 193 269 79
40 % 193 269 98
30 % 193 269 97
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8563
95 % 163 241 52
90 % 156 224 70
70 % 159 230 74
50 % 159 230 99
40 % 159 230 118
30 % 159 230 119
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 2803
95 % 128 164 110
90 % 162 233 67
70 % 170 244 68
50 % 175 251 91
40 % 175 251 107
30 % 175 251 106
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 33343
95 % 1 3 27668
90 % 1 3 26682
70 % 1 3 24235
50 % 1 3 23010
40 % 1 3 21091
30 % 1 3 18889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 2 B, F Histone H2B 9031
2 1KX5 6 D, H histone H2B.2 8355
3 2ARO 2 B, F Histone H2B 9031
4 5B0Z 4 D, H Histone H2B type 1-J 9606
5 5Y0D 4 D, H Histone H2B type 1-J 9606
6 5Y0C 5 D, H Histone H2B type 1-J 9606
7 5AV8 4 D, H Histone H2B type 1-J 9606
8 1KX3 5 D, H histone H2B.2 8355
9 5AV9 4 D, H Histone H2B type 1-J 9606
10 5AV6 4 D, H Histone H2B type 1-J 9606
11 1HQ3 2 B, F HISTONE H2B 9031
12 3UTA 4 D, H Histone H2B 1.1 8355
13 5X7X 4 D, H Histone H2B type 1-J 9606
14 5B31 4 D, H Histone H2B type 1-J 9606
15 3UTB 4 D, H Histone H2B 1.1 8355
16 1M19 5 D, H Histone H2B.1 8355
17 5AVB 4 D, H Histone H2B type 1-J 9606
18 5AVC 4 D, H Histone H2B type 1-J 9606
19 5AV5 4 D, H Histone H2B type 1-J 9606
20 6JR1 4 D, H Histone H2B type 1-J 9606
21 5Z30 4 D, H Histone H2B type 1-J 9606
22 5JRG 4 D, H Histone H2B type 1-J 9606
23 3UT9 4 D, H Histone H2B 1.1 8355
24 5B32 4 D, H Histone H2B type 1-J 9606
25 4WU8 6 D, H Histone H2B 1.1 8355
26 1P3I 5 D, H Histone H2B 8355
27 3MGR 4 D, H Histone H2B 1.1 8355
28 1F66 5 D, H HISTONE H2B 8355
29 3AZG 4 D, H Histone H2B type 1-J 9606
30 1M18 5 D, H Histone H2B.1 8355
31 5B2J 4 D, H Histone H2B type 1-J 9606
32 1P3L 5 D, H Histone H2B 8355
33 1EQZ 3 B, F PROTEIN (HISTONE H2B) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
34 5B0Y 4 D, H Histone H2B type 1-J 9606
35 6JR0 4 D, H Histone H2B type 1-J 9606
36 2CV5 5 D, H Histone H2B K 9606
37 5CP6 6 D, H Histone H2B 1.1 8355
38 5ZBX 4 D, H Histone H2B type 1-J 9606
39 5XF6 4 D, H Histone H2B 1.1 8355
40 3MGP 4 D, H Histone H2B 1.1 8355
41 4J8U 4 D, H Histone H2B 1.1 8355
42 4WU9 4 D, H Histone H2B 1.1 8355
43 3AZL 4 D, H Histone H2B type 1-J 9606
44 5Z23 4 D, H Histone H2B type 1-J Se-Met-substituted H2B 9606
45 3AFA 4 D, H Histone H2B type 1-J 9606
46 3AZF 4 D, H Histone H2B type 1-J 9606
47 5GTC 4 D, H Histone H2B type 1-J 9606
48 1P3P 5 D, H Histone H2B 8355
49 3AV1 4 D, H Histone H2B type 1-J 9606
50 1M1A 5 D, H Histone H2B.1 8355
51 5CPK 4 D, H Histone H2B type 1-J 9606
52 5AY8 4 D, H Histone H2B type 1-J 9606
53 3MNN 4 D, H Histone H2B 1.1 8355
54 1P3G 5 D, H Histone H2B 8355
55 4J8W 4 D, H Histone H2B 1.1 8355
56 1P34 5 D, H Histone H2B 8355
57 5XF3 4 D, H Histone H2B type 1-J 9606
58 5DNM 4 D, H Histone H2B 1.1 8355
59 3MGQ 4 D, H Histone H2B 1.1 8355
60 3WTP 4 D, H Histone H2B type 1-J 9606
61 2NZD 6 D, H Histone H2B 8355
62 3A6N 4 D, H Histone H2B type 1-J 9606
63 5DNN 4 D, H Histone H2B 1.1 8355
64 5GT0 4 D, H Histone H2B type 1-J 9606
65 3AZI 4 D, H Histone H2B type 1-J 9606
66 1P3O 5 D, H Histone H2B 8355
67 1KX4 5 D, H histone H2B.2 8355
68 3AZN 4 D, H Histone H2B type 1-J 9606
69 1P3M 5 D, H Histone H2B 8355
70 4J8V 4 D, H Histone H2B 1.1 8355
71 5B33 4 D, H Histone H2B type 1-J 9606
72 3X1S 4 D, H Histone H2B type 1-B 9606
73 3LZ0 4 D, H Histone H2B 1.1 8355
74 1P3F 5 D, H Histone H2B 8355
75 1P3K 5 D, H Histone H2B 8355
76 5B2I 4 D, H Histone H2B type 1-J 9606
77 1P3A 5 D, H Histone H2B 8355
78 3LZ1 4 D, H Histone H2B 1.1 8355
79 5GXQ 4 D, H Histone H2B type 1-J 9606
80 4Z5T 4 D, H Histone H2B type 1-J 9606
81 3AV2 4 D, H Histone H2B type 1-J 9606
82 3AYW 4 D, H Histone H2B type 1-J 9606
83 5XF5 4 D, H Histone H2B type 1-J 9606
84 3AZJ 4 D, H Histone H2B type 1-J 9606
85 4KGC 4 D, H Histone H2B 1.1 8355
86 5XF4 4 D, H Histone H2B type 1-J 9606
87 5GSE 4 D, H, N Histone H2B type 1-J 9606
88 1P3B 5 D, H Histone H2B 8355
89 3AZK 4 D, H Histone H2B type 1-J 9606
90 4J8X 4 D, H Histone H2B 1.1 8355
91 3LEL 4 D, H, N, R Histone H2B 1.1 8355
92 3KUY 4 D, H Histone H2B 8355
93 3AZM 4 D, H Histone H2B type 1-J 9606
94 3X1U 5 D, H Histone H2B type 1-B 9606
95 3MGS 4 D, H Histone H2B 1.1 8355
96 3WA9 4 D, H Histone H2B type 1-J 9606
97 3AZH 4 D, H Histone H2B type 1-J 9606
98 5B40 4 D, H Histone H2B type 1-J 9606
99 3WAA 4 D, H Histone H2B type 1-J 9606
100 5CPI 4 D, H Histone H2B type 1-J 9606
101 3W99 4 D, H Histone H2B type 1-J 9606
102 3AZE 4 D, H Histone H2B type 1-J 9606
103 3W96 4 D, H Histone H2B type 1-J 9606
104 6OM3 4 D, H, P, T Histone H2B 1.1 8355
105 5CPJ 4 D, H Histone H2B type 1-J 9606
106 5B24 4 D, H Histone H2B type 1-J 9606
107 2HIO 2 B PROTEIN (HISTONE H2B) 9031
108 4LD9 4 D, H Histone H2B 1.1 8355
109 4XUJ 4 D, H Histone H2B 1.1 UNP residues 2-126 8355
110 4YM5 4 D, H Histone H2B type 1-J 9606
111 4YM6 4 D, H Histone H2B type 1-J 9606
112 2FJ7 6 D, H Histone H2B 8355
113 3W98 4 D, H Histone H2B type 1-J 9606
114 3AN2 4 D, H Histone H2B type 1-J 9606
115 3B6F 6 D, H Histone H2B 1.1 8355
116 5OY7 1 D, H, L, P, T, X, b, f Histone H2B 1.1 8355
117 3B6G 6 D, H Histone H2B 1.1 8355
118 6HKT 4 1, 3, D, H, N, R, X, d, h, n, r, x Histone H2B type 1-J THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
119 5OXV 2 D, H, N, R Histone H2B 1.1 8355
120 1ZBB 6 D, H, d, h Histone H2B.1 8355
121 6L49 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
122 6L4A 4 D, H, N, R, V, Z Histone H2B type 1-J 9606
123 6UGM 4 D Histone H2B 8355
124 6UGM 5 H Histone H2B 1.1 8355
125 6UH5 4 D Histone H2B 8355
126 6SEG 4 D, H Histone H2B type 1-C/E/F/G/I 9606
127 6SE0 4 D, H Histone H2B type 1-C/E/F/G/I 9606
128 6SE6 4 D, H Histone H2B type 1-C/E/F/G/I 9606
129 6SEE 4 D, H Histone H2B type 1-C/E/F/G/I 9606
130 6SEF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
131 6RNY 4 D, H Histone H2B type 1-C/E/F/G/I 9606
132 6R8Y 4 D, H Histone H2B type 1-J 9606
133 6R8Z 4 D, H Histone H2B type 1-J 9606
134 6R90 4 D, H Histone H2B type 1-J 9606
135 6R91 4 D, H Histone H2B type 1-J 9606
136 6R92 7 D, H Histone H2B type 1-J 9606
137 6R93 6 D, H Histone H2B type 1-J 9606
138 6R94 6 D, H Histone H2B type 1-J 9606
139 6R0C 4 D, H Histone H2B type 1-C/E/F/G/I 9606
140 6O1D 4 D, H Histone H2B type 1-J 9606
141 6J4W 22 d, h Histone H2B type 1-J 9606
142 6J4X 22 d, h Histone H2B type 1-J 9606
143 6J4Y 22 d, h Histone H2B type 1-J 9606
144 6J4Z 21 d, h Histone H2B type 1-J 9606
145 6J50 21 d, h Histone H2B type 1-J 9606
146 6J51 22 d, h Histone H2B type 1-J 9606
147 6IR9 22 d, h Histone H2B type 1-J 9606
148 6INQ 19 d, h Histone H2B type 1-J 9606
149 6HTS 8 L, P Histone H2B type 1-J 9606
150 6E0C 4 D, H Histone H2B type 1-J 9606
151 6E0P 4 D, H Histone H2B type 1-J 9606
152 6A5O 19 d, h Histone H2B type 1-J 9606
153 6A5P 19 d, h Histone H2B type 1-J 9606
154 6A5R 19 d, h Histone H2B type 1-J 9606
155 6A5T 19 d, h Histone H2B type 1-J 9606
156 6A5U 19 d, h Histone H2B, Histone H2B type 1-J 9606
157 6A5L 19 d, h Histone H2B type 1-J 9606
158 6FML 12 P, T Histone H2B type 1-C/E/F/G/I 9606
159 6C0W 4 D, H Histone H2B 9606
160 6BUZ 4 D, H Histone H2B 9606
161 5X0X 4 D, H Histone H2B 1.1 8355
162 5KGF 4 D, H Histone H2B type 1-C/E/F/G/I 9606
163 2RVQ 2 D Histone H2B type 1-J 9606
164 3C9K 2 B, F Histone H2B 7 9031