6SE6

Class2 : CENP-A nucleosome in complex with CENP-C central region


Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 3509
95 % 8 14 3182
90 % 9 16 2815
70 % 8 11 4460
50 % 221 299 73
40 % 221 299 96
30 % 221 299 95
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 200 279 20
95 % 222 304 18
90 % 229 313 20
70 % 230 312 28
50 % 230 312 66
40 % 230 312 90
30 % 230 312 92
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 9424
95 % 194 278 34
90 % 181 255 49
70 % 194 273 53
50 % 207 286 81
40 % 207 286 103
30 % 207 286 100
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 1669
95 % 153 189 80
90 % 197 274 43
70 % 205 285 49
50 % 210 292 76
40 % 210 292 99
30 % 210 292 98
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 37661
95 % 1 3 30006
90 % 1 3 28874
70 % 1 3 26087
50 % 1 3 22855
40 % 1 3 21265
30 % 1 3 19051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6SE6 7 V Centromere protein C 9606
2 6SEE 7 V Centromere protein C 9606
3 6SEF 7 V Centromere protein C 9606