Sequence Similarity Clusters for the Entities in PDB 6SE6

Entity #1 | Chains: A,E
Histone H3-like centromeric protein A protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 3683
95 % 7 13 3297
90 % 8 15 2831
70 % 7 10 4635
50 % 194 270 80
40 % 194 270 96
30 % 194 270 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 252 23
95 % 194 274 33
90 % 201 283 36
70 % 202 282 46
50 % 202 282 77
40 % 202 282 94
30 % 202 282 93
Entity #3 | Chains: C,G
Histone H2A type 2-A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 8678
95 % 172 254 37
90 % 165 237 64
70 % 175 252 57
50 % 182 259 86
40 % 182 259 101
30 % 182 259 102
Entity #4 | Chains: D,H
Histone H2B type 1-C/E/F/G/I protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 13 2325
95 % 136 172 103
90 % 172 247 56
70 % 180 258 54
50 % 185 265 84
40 % 185 265 100
30 % 185 265 100
Entity #5 | Chains: I
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: V
Centromere protein C protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 35441
95 % 1 3 28330
90 % 1 3 27279
70 % 1 3 24757
50 % 1 3 21753
40 % 1 3 19888
30 % 1 3 17859

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6SE6 7 V Centromere protein C 9606
2 6SEE 7 V Centromere protein C 9606
3 6SEF 7 V Centromere protein C 9606