Crystal structure of HLA-B*07:02 in complex with an NY-ESO-1 peptide

Structural Similarities for the Entities in PDB 6AT5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: HLA class I histocompatibility antigen, B-7 alpha chain protein | Length: 362


Entity #2 | Chains B

Description: Beta-2-microglobulin protein | Length: 119

No structure alignment results are available for 6AT5.B explicitly.

It is represented by chain 1K5N.b which has more than 90% sequence identity.

Show structure comparison results


View how chain 6AT5.B compares with the representative chain d1k5nb_. Select a comparison method:

Entity #3 | Chains C

Description: Cancer/testis antigen 1 peptide protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.