Structural Similarities for the Entities in PDB 6ORQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,F

Description: RC1 variant of HIV-1 Env glycoprotein gp41 protein | Length: 148

No structure alignment results are available for 6ORQ.A, 6ORQ.C, 6ORQ.F explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B,G,I

Description: RC1 variant of HIV-1 Env glycoprotein gp120 protein | Length: 473

No structure alignment results are available for 6ORQ.B, 6ORQ.G, 6ORQ.I explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #3 | Chains D,H,J

Description: Ab275MUR antibody Fab heavy chain protein | Length: 122

No structure alignment results are available for 6ORQ.D, 6ORQ.H, 6ORQ.J explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains E,K,L

Description: Ab275MUR antibody Fab light chain protein | Length: 218

No structure alignment results are available for 6ORQ.E, 6ORQ.K, 6ORQ.L explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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References