6RXV

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B2


Structural Similarities for the Entities in PDB 6RXV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains UA

Description: Periodic tryptophan protein 2-like protein protein | Length: 904

No structure alignment results are available for 6RXV.UA explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains UM

Description: Utp13 protein | Length: 912

No structure alignment results are available for 6RXV.UM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains UN

Description: Utp14 protein | Length: 938

No structure alignment results are available for 6RXV.UN explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains UO

Description: Utp15 protein | Length: 557

No structure alignment results are available for 6RXV.UO explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains UQ

Description: Utp17 protein | Length: 960

No structure alignment results are available for 6RXV.UQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains UR

Description: Utp18 protein | Length: 618

No structure alignment results are available for 6RXV.UR explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains UU

Description: Utp21 protein | Length: 1049

No structure alignment results are available for 6RXV.UU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains UX

Description: Utp24 protein | Length: 193

No structure alignment results are available for 6RXV.UX explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains UZ

Description: Utp30 protein | Length: 391

No structure alignment results are available for 6RXV.UZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains CA,CB

Description: Nop1 protein | Length: 313

No structure alignment results are available for 6RXV.CA, 6RXV.CB explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains CC

Description: Nop56 protein | Length: 523

No structure alignment results are available for 6RXV.CC explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains UB

Description: Utp2 protein | Length: 907

No structure alignment results are available for 6RXV.UB explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains CD

Description: Nop58 protein | Length: 582

No structure alignment results are available for 6RXV.CD explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains CE,CF

Description: Snu13 protein | Length: 127

No structure alignment results are available for 6RXV.CE, 6RXV.CF explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains CG

Description: Rrp9 protein | Length: 630

No structure alignment results are available for 6RXV.CG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains CH

Description: RNA 3'-terminal phosphate cyclase-like protein protein | Length: 411

No structure alignment results are available for 6RXV.CH explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains CI

Description: Bms1 protein | Length: 1163

No structure alignment results are available for 6RXV.CI explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains CJ

Description: Imp3 protein | Length: 183

No structure alignment results are available for 6RXV.CJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains CK

Description: Imp4 protein | Length: 297

No structure alignment results are available for 6RXV.CK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains CL

Description: Mpp10 protein | Length: 785

No structure alignment results are available for 6RXV.CL explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains CM

Description: Sof1 protein | Length: 446

No structure alignment results are available for 6RXV.CM explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains CN,CO

Description: Emg1 protein | Length: 252

No structure alignment results are available for 6RXV.CN, 6RXV.CO explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains UC

Description: Utp3 protein | Length: 648

No structure alignment results are available for 6RXV.UC explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains CP

Description: KRR1 small subunit processome component protein | Length: 322

No structure alignment results are available for 6RXV.CP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains CQ

Description: Pre-rRNA-processing protein PNO1 protein | Length: 259

No structure alignment results are available for 6RXV.CQ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains CR,CS

Description: Kre33 protein | Length: 1073

No structure alignment results are available for 6RXV.CR, 6RXV.CS explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains CT

Description: Fcf2 protein | Length: 203

No structure alignment results are available for 6RXV.CT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains Ca

Description: 40S ribosomal protein S1 protein | Length: 255

No structure alignment results are available for 6RXV.Ca explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #35 | Chains Cb

Description: 40S ribosomal protein S4 protein | Length: 264

No structure alignment results are available for 6RXV.Cb explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #36 | Chains Cc

Description: 40S ribosomal protein s5-like protein protein | Length: 212

No structure alignment results are available for 6RXV.Cc explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains Cd

Description: 40S ribosomal protein S6 protein | Length: 239

No structure alignment results are available for 6RXV.Cd explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains Ce

Description: 40S ribosomal protein S7 protein | Length: 203

No structure alignment results are available for 6RXV.Ce explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains Cf

Description: 40S ribosomal protein S8 protein | Length: 202

No structure alignment results are available for 6RXV.Cf explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains UD

Description: Utp4 protein | Length: 884

No structure alignment results are available for 6RXV.UD explicitly.

It is represented by chain 5N1A.A which is 100% sequence identical.

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Entity #40 | Chains Cg

Description: 40S ribosomal protein s9-like protein protein | Length: 190

No structure alignment results are available for 6RXV.Cg explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #41 | Chains Ch

Description: 40S ribosomal protein S13-like protein protein | Length: 151

No structure alignment results are available for 6RXV.Ch explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #42 | Chains Ci

Description: 40S ribosomal protein S14-like protein protein | Length: 150

No structure alignment results are available for 6RXV.Ci explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #43 | Chains Cj

Description: 40S ribosomal protein S16-like protein protein | Length: 143

No structure alignment results are available for 6RXV.Cj explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains Ck

Description: 40S ribosomal protein S11-like protein protein | Length: 161

No structure alignment results are available for 6RXV.Ck explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #45 | Chains Cm

Description: 40S ribosomal protein S22-like protein protein | Length: 130

No structure alignment results are available for 6RXV.Cm explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #46 | Chains Cn

Description: 40S ribosomal protein s23-like protein protein | Length: 145

No structure alignment results are available for 6RXV.Cn explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #47 | Chains Co

Description: 40S ribosomal protein S24 protein | Length: 136

No structure alignment results are available for 6RXV.Co explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #48 | Chains Cp

Description: 40S ribosomal protein S28-like protein protein | Length: 68

No structure alignment results are available for 6RXV.Cp explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #49 | Chains CU

Description: Faf1 protein | Length: 311

No structure alignment results are available for 6RXV.CU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains UF

Description: Utp6 protein | Length: 414

No structure alignment results are available for 6RXV.UF explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains C1

Description: 35S ribosomal RNA rna | Length: 2352

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #51 | Chains C2

Description: U3 snoRNA rna | Length: 230

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #52 | Chains UV

Description: U3 small nucleolar RNA-associated protein 22 protein | Length: 1171

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Entity #53 | Chains CV

Description: Rrp7 protein | Length: 322

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Entity #54 | Chains CW

Description: Ribosome biogenesis protein ENP2 protein | Length: 668

No structure alignment results are available for 6RXV.CW explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains UT

Description: Utp20 protein | Length: 2612

No structure alignment results are available for 6RXV.UT explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains UH

Description: Utp8 protein | Length: 930

No structure alignment results are available for 6RXV.UH explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains UE,UI

Description: Utp5 protein | Length: 410

No structure alignment results are available for 6RXV.UE, 6RXV.UI explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains US

Description: Noc4 protein | Length: 549

No structure alignment results are available for 6RXV.US explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains Cl

Description: Rps18 protein | Length: 156

No structure alignment results are available for 6RXV.Cl explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains UG

Description: Utp7 protein | Length: 558

No structure alignment results are available for 6RXV.UG explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #60 | Chains CX

Description: Enp1 protein | Length: 480

No structure alignment results are available for 6RXV.CX explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #61 | Chains CY

Description: U3 small nucleolar ribonucleoprotein protein lcp5-like protein protein | Length: 381

No structure alignment results are available for 6RXV.CY explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #62 | Chains CZ

Description: Bfr2 protein | Length: 609

No structure alignment results are available for 6RXV.CZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains UP

Description: Utp16 protein | Length: 364

No structure alignment results are available for 6RXV.UP explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains UJ

Description: UTP10 protein | Length: 1802

No structure alignment results are available for 6RXV.UJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains UK

Description: U3 small nucleolar RNA-associated protein 11 protein | Length: 270

No structure alignment results are available for 6RXV.UK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains UL

Description: Utp12 protein | Length: 962

No structure alignment results are available for 6RXV.UL explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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References