SOX9 - SRY-box 9

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for SOX9 View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: P48436 HGNC Approved Gene Symbol: SOX9 
Previous Symbols: CMD1, CMPD1 Ensembl ENSG00000125398 
Synonyms : SRA1 Previous Names: "campomelic dysplasia, autosomal sex-reversal", "SRY (sex determining region Y)-box 9", "SRY box 9"
HgncId : HGNC:11204  Omim: 608160 
Refseq: NM_000346  GenBank: S74506 
 
Genomic coordinates: Cytogenetic location: 17q24.3 reset view
Fullscreen
Dalliance goes here...

This feature requires an up-to-date web browser.

Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

SOX9 Gene Structure

Chromosome: chr17
Genbank ID: NM_000346 Orientation: +
Length coding sequence : 1527 nucleotides.
Regionstartendregion lengthphase at end
UTR70,117,16070,117,532
Exon70,117,53370,117,9634312
Exon70,118,86070,119,1132541
Exon70,119,68470,120,5288450
UTR70,120,52970,122,560