5YB6

L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-lysine complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Ligand complex structures of l-amino acid oxidase/monooxygenase from

Im, D.Matsui, D.Arakawa, T.Isobe, K.Asano, Y.Fushinobu, S.

(2018) FEBS Open Bio 8: 314-324


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
L-amino acid oxidase/monooxygenase
A, B, C, D
580Pseudomonas sp. AIU 813Gene Names: laao (mog)
Find proteins for W6JQJ6 (Pseudomonas sp. AIU 813)
Go to UniProtKB:  W6JQJ6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download SDF File 
Download CCD File 
A, B, C, D
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
LYS
Query on LYS

Download SDF File 
Download CCD File 
A, B, C, D
LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
 Ligand Interaction
PG6
Query on PG6

Download SDF File 
Download CCD File 
A, B, C, D
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.234 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 97.071α = 90.00
b = 132.293β = 108.67
c = 100.963γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data processing
PDB_EXTRACTdata extraction
MOLREPphasing
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-03-21
    Type: Database references