5ZIU

Crystal structure of human Entervirus D68 RdRp


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.147 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of human Entervirus D68 RdRp in complex with NADPH

Wang, M.L.Zhang, Y.Dou, Y.S.Chen, Y.P.Lu, D.R.Jiang, H.Chen, Y.J.Li, L.Zhang, C.H.Shi, Q.L.Su, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RdRp
A
457Enterovirus D68Mutation(s): 0 
Find proteins for I6TFG7 (Enterovirus D68)
Go to UniProtKB:  I6TFG7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.147 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.211 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 59.835α = 90.00
b = 59.835β = 90.00
c = 358.923γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-04-17
    Type: Initial release