Download MendeleyStructure of the complete, membrane-assembled COPII reveals a complex interaction network.
Zanetti, G.To be published.
6ZGA
COPII on membranes, inner coat
- DOI: 10.2210/pdb6ZGA/pdb
- EMDataResource: EMD-11199
- Classification: PROTEIN TRANSPORT
- Organism(s): Saccharomyces cerevisiae, Saccharomyces cerevisiae S288C
- Expression System: Spodoptera frugiperda, Escherichia coli
- Mutation(s): No
- Deposited: 2020-06-18 Released: 2021-02-17
- Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), European Research Council (ERC)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 4.60 Å
- Aggregation State: 3D ARRAY
- Reconstruction Method: SUBTOMOGRAM AVERAGING
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein transport protein SEC23 | A, E | 767 | Saccharomyces cerevisiae | Mutation(s): 0 |  |
Find proteins for P15303 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P15303 Go to UniProtKB: P15303 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein transport protein SEC24 | B, F | 926 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: SEC24, ANU1, YIL109C |  |
Find proteins for P40482 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40482 Go to UniProtKB: P40482 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small COPII coat GTPase SAR1 | C | 190 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 3.6.5 |  |
Find proteins for P20606 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20606 Go to UniProtKB: P20606 | |||||
Protein Feature ViewExpand | |||||
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- Find similar proteins by: Sequence | Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PRO-PRO-PRO | D, H | 3 | Saccharomyces cerevisiae | Mutation(s): 0 |  |
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small COPII coat GTPase SAR1 | G | 189 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 3.6.5 |  |
Find proteins for P20606 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20606 Go to UniProtKB: P20606 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GNP Query on GNP | C, G | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N |  | Ligand Interaction | |
| ZN Query on ZN | A, B, E, F | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | C, G | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 4.60 Å
- Aggregation State: 3D ARRAY
- Reconstruction Method: SUBTOMOGRAM AVERAGING
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-06-18
- Released Date: 2021-02-17 Deposition Author(s): Zanetti, G., Hutchings, J., Cheung, A.C.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/T002670/1 |
| European Research Council (ERC) | United Kingdom | 852915 CRYTOCOP |
