7D6Z

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
PF01327Polypeptide deformylase (Pep_deformylase)Polypeptide deformylase- Domain
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
PF05698Bacterial trigger factor protein (TF) C-terminus (Trigger_C)Bacterial trigger factor protein (TF) C-terminus- Family
PF05697Bacterial trigger factor protein (TF) (Trigger_N)Bacterial trigger factor protein (TF)- Family
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomerase- Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
30S ribosomal protein S20
    30S ribosomal protein S21
      C [auth 2]
      E-site tRNAnonenonenone
      D [auth 3]
      P-site tRNAnonenonenone
      E [auth 4]
      A-site tRNAnonenonenone
      50S ribosomal protein L31
        G [auth A]
        23S ribosomal rRNAnonenonenone
        H [auth B]
        5S ribosomal rRNAnonenonenone
        50S ribosomal protein L2
          50S ribosomal protein L3
            50S ribosomal protein L4
            50S ribosomal protein L5
              50S ribosomal protein L6
              50S ribosomal protein L9
                50S ribosomal protein L11
                  50S ribosomal protein L13
                    50S ribosomal protein L14
                      50S ribosomal protein L15
                        50S ribosomal protein L16
                          50S ribosomal protein L18
                            50S ribosomal protein L19
                              50S ribosomal protein L20
                                50S ribosomal protein L21
                                  50S ribosomal protein L22
                                  50S ribosomal protein L24
                                    50S ribosomal protein L25
                                    50S ribosomal protein L27
                                    50S ribosomal protein L28
                                      50S ribosomal protein L29
                                        50S ribosomal protein L23
                                          50S ribosomal protein L32
                                          50S ribosomal protein L33
                                          50S ribosomal protein L36
                                            LA [auth f]
                                            16S ribosomal rRNAnonenonenone
                                            Peptide deformylase
                                              30S ribosomal protein S2
                                                30S ribosomal protein S3
                                                  30S ribosomal protein S4
                                                  30S ribosomal protein S6, fully modified isoform
                                                    30S ribosomal protein S8
                                                      30S ribosomal protein S9
                                                        30S ribosomal protein S10
                                                          30S ribosomal protein S11
                                                            30S ribosomal protein S12
                                                            30S ribosomal protein S13
                                                              30S ribosomal protein S14
                                                                30S ribosomal protein S15
                                                                  30S ribosomal protein S16
                                                                    30S ribosomal protein S17
                                                                    30S ribosomal protein S18
                                                                      30S ribosomal protein S19
                                                                        50S ribosomal protein L17
                                                                          50S ribosomal protein L30
                                                                            50S ribosomal protein L34
                                                                              50S ribosomal protein L35
                                                                                Trigger factor
                                                                                30S ribosomal protein S5
                                                                                30S ribosomal protein S7